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authorMichał Górny <mgorny@gentoo.org>2024-06-10 16:22:59 +0200
committerMichał Górny <mgorny@gentoo.org>2024-06-10 16:41:36 +0200
commitc42eca470bc5f0f48fc90ab03865f5707c52510a (patch)
treee959359d96e0345a8daad2b12c29de20c69fac60
parentdev-python/jc: Remove old (diff)
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dev-python/jsonpickle: Add a numpy-2 patch
Signed-off-by: Michał Górny <mgorny@gentoo.org>
-rw-r--r--dev-python/jsonpickle/files/jsonpickle-3.2.1-numpy-2.patch157
-rw-r--r--dev-python/jsonpickle/jsonpickle-3.2.1.ebuild8
2 files changed, 164 insertions, 1 deletions
diff --git a/dev-python/jsonpickle/files/jsonpickle-3.2.1-numpy-2.patch b/dev-python/jsonpickle/files/jsonpickle-3.2.1-numpy-2.patch
new file mode 100644
index 000000000000..6fdc989d990e
--- /dev/null
+++ b/dev-python/jsonpickle/files/jsonpickle-3.2.1-numpy-2.patch
@@ -0,0 +1,157 @@
+From 0ab3cf0ffcdb364a8a75e71acfb267e5aaabc0a0 Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?= <mgorny@gentoo.org>
+Date: Mon, 10 Jun 2024 03:55:47 +0200
+Subject: [PATCH 1/2] Fix data types in tests for NumPy 2
+
+Fix a number of test compatibility issues with NumPy 2. That is:
+
+- replace `np.float_` with `np.float64`,
+- replace `np.complex_` with `np.complex128`,
+- remove `np.unicode_` as equivalent to `np.str_`.
+
+The LHS types are also aliases to the RHS types in NumPy 1.x, so this
+is NFC on NumPy 1.x. These aliases were removed in 2.x, so the code
+needs to be updated for tests to pass on NumPy 2.x.
+---
+ tests/numpy_test.py | 7 ++-----
+ tests/pandas_test.py | 13 +++++--------
+ 2 files changed, 7 insertions(+), 13 deletions(-)
+
+diff --git a/tests/numpy_test.py b/tests/numpy_test.py
+index e271725..dd50d5e 100644
+--- a/tests/numpy_test.py
++++ b/tests/numpy_test.py
+@@ -32,9 +32,7 @@ def test_dtype_roundtrip():
+ dtypes = [
+ np.int_,
+ np.int32,
+- np.float_,
+ np.float64,
+- np.complex_,
+ np.complex128,
+ np.str_,
+ np.object_,
+@@ -86,15 +84,14 @@ def test_generic_roundtrip():
+ values = [
+ np.int_(1),
+ np.int32(-2),
+- np.float_(2.5),
++ np.float64(2.5),
+ np.nan,
+ -np.inf,
+ np.inf,
+ np.datetime64('2014-01-01'),
+ np.str_('foo'),
+- np.unicode_('bar'),
+ np.object_({'a': 'b'}),
+- np.complex_(1 - 2j),
++ np.complex128(1 - 2j),
+ ]
+ for value in values:
+ decoded = roundtrip(value)
+diff --git a/tests/pandas_test.py b/tests/pandas_test.py
+index 532563f..414bd65 100644
+--- a/tests/pandas_test.py
++++ b/tests/pandas_test.py
+@@ -34,14 +34,13 @@ def test_series_roundtrip():
+ ser = pd.Series(
+ {
+ 'an_int': np.int_(1),
+- 'a_float': np.float_(2.5),
++ 'a_float': np.float64(2.5),
+ 'a_nan': np.nan,
+ 'a_minus_inf': -np.inf,
+ 'an_inf': np.inf,
+ 'a_str': np.str_('foo'),
+- 'a_unicode': np.unicode_('bar'),
+ 'date': np.datetime64('2014-01-01'),
+- 'complex': np.complex_(1 - 2j),
++ 'complex': np.complex128(1 - 2j),
+ # TODO: the following dtypes are not currently supported.
+ # 'object': np.object_({'a': 'b'}),
+ }
+@@ -54,14 +53,13 @@ def test_dataframe_roundtrip():
+ df = pd.DataFrame(
+ {
+ 'an_int': np.int_([1, 2, 3]),
+- 'a_float': np.float_([2.5, 3.5, 4.5]),
++ 'a_float': np.float64([2.5, 3.5, 4.5]),
+ 'a_nan': np.array([np.nan] * 3),
+ 'a_minus_inf': np.array([-np.inf] * 3),
+ 'an_inf': np.array([np.inf] * 3),
+ 'a_str': np.str_('foo'),
+- 'a_unicode': np.unicode_('bar'),
+ 'date': np.array([np.datetime64('2014-01-01')] * 3, dtype="datetime64[s]"),
+- 'complex': np.complex_([1 - 2j, 2 - 1.2j, 3 - 1.3j]),
++ 'complex': np.complex128([1 - 2j, 2 - 1.2j, 3 - 1.3j]),
+ # TODO: the following dtypes are not currently supported.
+ # 'object': np.object_([{'a': 'b'}]*3),
+ }
+@@ -76,12 +74,11 @@ def test_multindex_dataframe_roundtrip():
+ 'idx_lvl0': ['a', 'b', 'c'],
+ 'idx_lvl1': np.int_([1, 1, 2]),
+ 'an_int': np.int_([1, 2, 3]),
+- 'a_float': np.float_([2.5, 3.5, 4.5]),
++ 'a_float': np.float64([2.5, 3.5, 4.5]),
+ 'a_nan': np.array([np.nan] * 3),
+ 'a_minus_inf': np.array([-np.inf] * 3),
+ 'an_inf': np.array([np.inf] * 3),
+ 'a_str': np.str_('foo'),
+- 'a_unicode': np.unicode_('bar'),
+ }
+ )
+ df = df.set_index(['idx_lvl0', 'idx_lvl1'])
+
+From 8bc2bdd42bc111d90edbcef8005640d5a51627bf Mon Sep 17 00:00:00 2001
+From: =?UTF-8?q?Micha=C5=82=20G=C3=B3rny?= <mgorny@gentoo.org>
+Date: Mon, 10 Jun 2024 04:02:17 +0200
+Subject: [PATCH 2/2] Fix `newbyteorder()` use for NumPy 2.x
+
+Replace the `arr.newbyteorder()` use with:
+
+ arr.view(arr.dtype.newbyteorder())
+
+as suggested in the exception that's raised when the tests are run
+in NumPy 2.x. With this change, the code works both with NumPy 1.x
+and NumPy 2.x.
+---
+ tests/numpy_test.py | 24 ++++++++++++++----------
+ 1 file changed, 14 insertions(+), 10 deletions(-)
+
+diff --git a/tests/numpy_test.py b/tests/numpy_test.py
+index dd50d5e..2e6725b 100644
+--- a/tests/numpy_test.py
++++ b/tests/numpy_test.py
+@@ -306,18 +306,22 @@ def test_immutable():
+ def test_byteorder():
+ """Test the byteorder for text and binary encodings"""
+ # small arr is stored as text
+- a = np.arange(10).newbyteorder()
+- b = a[:].newbyteorder()
+- _a, _b = roundtrip([a, b])
+- npt.assert_array_equal(a, _a)
+- npt.assert_array_equal(b, _b)
++ a = np.arange(10)
++ av = a.view(a.dtype.newbyteorder())
++ b = a[:]
++ bv = b.view(b.dtype.newbyteorder())
++ _av, _bv = roundtrip([av, bv])
++ npt.assert_array_equal(av, _av)
++ npt.assert_array_equal(bv, _bv)
+
+ # bigger arr is stored as binary
+- a = np.arange(100).newbyteorder()
+- b = a[:].newbyteorder()
+- _a, _b = roundtrip([a, b])
+- npt.assert_array_equal(a, _a)
+- npt.assert_array_equal(b, _b)
++ a = np.arange(100)
++ av = a.view(a.dtype.newbyteorder())
++ b = a[:]
++ bv = b.view(b.dtype.newbyteorder())
++ _av, _bv = roundtrip([av, bv])
++ npt.assert_array_equal(av, _av)
++ npt.assert_array_equal(bv, _bv)
+
+
+ def test_zero_dimensional_array():
diff --git a/dev-python/jsonpickle/jsonpickle-3.2.1.ebuild b/dev-python/jsonpickle/jsonpickle-3.2.1.ebuild
index 3bed0a414fd2..155b209d25ad 100644
--- a/dev-python/jsonpickle/jsonpickle-3.2.1.ebuild
+++ b/dev-python/jsonpickle/jsonpickle-3.2.1.ebuild
@@ -38,8 +38,14 @@ BDEPEND="
distutils_enable_tests pytest
python_prepare_all() {
- sed -i -e 's:--cov::' pytest.ini || die
+ local PATCHES=(
+ # https://github.com/jsonpickle/jsonpickle/pull/512
+ "${FILESDIR}/${P}-numpy-2.patch"
+ )
+
distutils-r1_python_prepare_all
+
+ sed -i -e 's:--cov::' pytest.ini || die
export SETUPTOOLS_SCM_PRETEND_VERSION=${PV}
}