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* sci-biology/allpathslg: Version bump, fix compilation errors with gcc-4.7, ↵Justin Lecher2012-07-091-11/+14
| | | | | | #425472 (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/allpathslg: Version bump, fix compilation errors with gcc-4.7, ↵Justin Lecher2012-07-092-1/+40
| | | | | | #425472 (Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
* sci-biology/mira: Drop oldJustin Lecher2012-07-081-10/+17
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/mira: Drop oldJustin Lecher2012-07-083-103/+5
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
* sci-biology/amos: Add fix for gcc-4.7, #425264; cleaned oldJustin Lecher2012-07-081-16/+11
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/amos: Add fix for gcc-4.7, #425264; cleaned oldJustin Lecher2012-07-087-218/+32
| | | | (Portage version: 2.2.0_alpha116/cvs/Linux x86_64)
* sci-biology/seaview: Version Bump imported from sci overlay, prepared by ↵Justin Lecher2012-07-041-10/+13
| | | | | | Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727 (Portage version: 2.2.0_alpha115/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/seaview: Version Bump imported from sci overlay, prepared by ↵Justin Lecher2012-07-042-2/+79
| | | | | | Martin Mokrejs, #351005; fixes also compilation with gcc47, #424727 (Portage version: 2.2.0_alpha115/cvs/Linux x86_64)
* sci-biology/plink: Moved to EAPI=4, add fix for building with gcc-4.7, #424709Justin Lecher2012-07-041-6/+18
| | | | (Portage version: 2.2.0_alpha115/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/plink: Moved to EAPI=4, add fix for building with gcc-4.7, #424709Justin Lecher2012-07-043-10/+79
| | | | (Portage version: 2.2.0_alpha115/cvs/Linux x86_64)
* sci-biology/hmmer: Fix the patch, thanks xarthisius and bonsaikitten for helpJustin Lecher2012-06-281-6/+6
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/hmmer: Fix the patch, thanks xarthisius and bonsaikitten for helpJustin Lecher2012-06-283-136/+8
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
* next patchJustin Lecher2012-06-281-0/+132
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* next tryJustin Lecher2012-06-281-5/+5
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* Plain patchJustin Lecher2012-06-281-5/+5
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* Fix patchJustin Lecher2012-06-281-5/+5
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* Fix patchJustin Lecher2012-06-282-10/+6
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
* fix patch againJustin Lecher2012-06-281-5/+5
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* fix patch againJustin Lecher2012-06-282-6/+10
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
* sci-biology/hmmer: Fix patch, screwed VCS tags, #423983Justin Lecher2012-06-281-5/+5
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/hmmer: Fix patch, screwed VCS tags, #423983Justin Lecher2012-06-282-8/+15
| | | | (Portage version: 2.2.0_alpha114/cvs/Linux x86_64)
* whitespaceMichael Sterrett2012-06-251-1/+1
| | | | (Portage version: 2.1.10.49/cvs/Linux x86_64, unsigned Manifest commit)
* whitespaceMichael Sterrett2012-06-251-2/+2
| | | | (Portage version: 2.1.10.49/cvs/Linux x86_64)
* marked x86 per bug 418439Jeff Horelick2012-06-251-16/+2
| | | | (Portage version: 2.2.0_alpha112/cvs/Linux i686, unsigned Manifest commit)
* marked x86 per bug 418439Jeff Horelick2012-06-252-3/+6
| | | | (Portage version: 2.2.0_alpha112/cvs/Linux i686)
* sci-biology/vaal: Version BumpJustin Lecher2012-06-251-4/+6
| | | | (Portage version: 2.2.0_alpha112/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vaal: Version BumpJustin Lecher2012-06-252-1/+48
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* sci-biology/vaal: Drop old, #309127; Handle openmp, don't install licenseJustin Lecher2012-06-251-19/+8
| | | | (Portage version: 2.2.0_alpha112/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/vaal: Drop old, #309127; Handle openmp, don't install licenseJustin Lecher2012-06-254-54/+30
| | | | (Portage version: 2.2.0_alpha112/cvs/Linux x86_64)
* Fix building with gcc-4.7 wrt #423497 by Diego Elio Pettenò ↵Kacper Kowalik2012-06-251-18/+19
| | | | | | <flameeyes@gentoo.org>, drop -O3 -ggdb from CXXFLAGS (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 895192F9)
* Fix building with gcc-4.7 wrt #423497 by Diego Elio Pettenò ↵Kacper Kowalik2012-06-254-6/+166
| | | | | | <flameeyes@gentoo.org>, drop -O3 -ggdb from CXXFLAGS (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/infernal: Fix for perl-5.16, #422561; move to EAPI=4Justin Lecher2012-06-251-16/+8
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/infernal: Fix for perl-5.16, #422561; move to EAPI=4Justin Lecher2012-06-253-11/+159
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/hmmer: Fix for build with perl-5.16, #421799; handle static-libsJustin Lecher2012-06-251-8/+10
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/hmmer: Fix for build with perl-5.16, #421799; handle static-libsJustin Lecher2012-06-254-18/+155
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* Stable for amd64, wrt bug #418439Agostino Sarubbo2012-06-241-16/+10
| | | | (Portage version: 2.1.10.65/cvs/Linux x86_64, signed Manifest commit with key 7CD2DC5D)
* Stable for amd64, wrt bug #418439Agostino Sarubbo2012-06-242-3/+6
| | | | (Portage version: 2.1.10.65/cvs/Linux x86_64)
* Don't install docs that are no longer there, thanks to David Abbott for the ↵Kacper Kowalik2012-06-231-7/+17
| | | | | | patch (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 895192F9)
* Don't install docs that are no longer there, thanks to David Abbott for the ↵Kacper Kowalik2012-06-232-14/+23
| | | | | | patch (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/bioperl-db: Add missing DEP on dev-perl/DBD-mysql, #422999Justin Lecher2012-06-231-6/+7
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/bioperl-db: Add missing DEP on dev-perl/DBD-mysql, #422999Justin Lecher2012-06-232-6/+11
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/maq: Add patch for gcc-4.7, #422869Justin Lecher2012-06-231-6/+8
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/maq: Add patch for gcc-4.7, #422869Justin Lecher2012-06-233-5/+44
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/last: Version BUmp, allows to compile with gcc-4.7, #422573Justin Lecher2012-06-201-5/+8
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/last: Version BUmp, allows to compile with gcc-4.7, #422573Justin Lecher2012-06-202-1/+46
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/prank: Fix compilation with gcc-4.7, #422581Justin Lecher2012-06-201-8/+10
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/prank: Fix compilation with gcc-4.7, #422581Justin Lecher2012-06-204-13/+42
| | | | (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/abyss: Fix compilation with gcc-4.7, #422599; install docs ↵Justin Lecher2012-06-201-8/+13
| | | | | | inside /usr/share/doc/, #297205 (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
* sci-biology/abyss: Fix compilation with gcc-4.7, #422599; install docs ↵Justin Lecher2012-06-206-5/+83
| | | | | | inside /usr/share/doc/, #297205 (Portage version: 2.2.0_alpha110/cvs/Linux x86_64)
* sci-biology/cd-hit: Version Bump, which fixes compilation problems with gcc ↵Justin Lecher2012-06-201-9/+13
| | | | | | 4.7, #422569; add missing eutils.eclass (Portage version: 2.2.0_alpha110/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)