diff options
| author |   Justin Lecher <jlec@gentoo.org> | 2012-06-25 19:09:19 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2012-06-25 19:09:19 +0000 |
| commit | 3810824a552076d3211308201d89185e0037fd5a (patch) | |
| tree | 2bde2af07ca962022091eeb53f5b411b6292a62c /sci-biology | |
| parent | version bump. note that version 6 is a rewrite, but can import your version 5... (diff) | |
| download | gentoo-2-3810824a552076d3211308201d89185e0037fd5a.tar.gz gentoo-2-3810824a552076d3211308201d89185e0037fd5a.tar.bz2 gentoo-2-3810824a552076d3211308201d89185e0037fd5a.zip | |
sci-biology/vaal: Version Bump
(Portage version: 2.2.0_alpha112/cvs/Linux x86_64)
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/vaal/ChangeLog | 7 | ||||
| -rw-r--r-- | sci-biology/vaal/vaal-42179.ebuild | 42 |
2 files changed, 48 insertions, 1 deletions
diff --git a/sci-biology/vaal/ChangeLog b/sci-biology/vaal/ChangeLog index aaf5089dc5ca..b7764f8287da 100644 --- a/sci-biology/vaal/ChangeLog +++ b/sci-biology/vaal/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/vaal # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.9 2012/06/25 18:50:32 jlec Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/ChangeLog,v 1.10 2012/06/25 19:09:19 jlec Exp $ + +*vaal-42179 (25 Jun 2012) + + 25 Jun 2012; Justin Lecher <jlec@gentoo.org> +vaal-42179.ebuild: + Version Bump 25 Jun 2012; Justin Lecher <jlec@gentoo.org> -vaal-1.2-r1.ebuild, vaal-1.6.ebuild, files/vaal-1.6-respect-flags.patch: diff --git a/sci-biology/vaal/vaal-42179.ebuild b/sci-biology/vaal/vaal-42179.ebuild new file mode 100644 index 000000000000..5713307e05e9 --- /dev/null +++ b/sci-biology/vaal/vaal-42179.ebuild @@ -0,0 +1,42 @@ +# Copyright 1999-2012 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/vaal/vaal-42179.ebuild,v 1.1 2012/06/25 19:09:19 jlec Exp $ + +EAPI=4 + +AUTOTOOLS_AUTORECONF=yes + +inherit autotools-utils + +DESCRIPTION="A variant ascertainment algorithm that can be used to detect SNPs, indels, and other polymorphisms" +HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd/" +SRC_URI=" + ftp://ftp.broad.mit.edu/pub/crd/VAAL/latest_source_code/${P}.tar.gz + ftp://ftp.broad.mit.edu/pub/crd/VAAL/VAAL_manual.doc" + +LICENSE="Whitehead-MIT" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="openmp" + +DEPEND=">=dev-libs/boost-1.41.0-r3" +RDEPEND="${DEPEND}" + +DOCS=( "${DISTDIR}/VAAL_manual.doc" ) + +src_prepare() { + sed \ + -e '/COPYING/d' \ + -i src/Makefile.am || die + + sed \ + -e 's:-ggdb3::g' \ + -e '/AC_OPENMP_CEHCK/d' \ + -i configure.ac || die + autotools-utils_src_prepare +} + +src_configure(){ + local myeconfargs=( $(use_enable openmp) ) + autotools-utils_src_configure +} |