Added the "BLASTMAT" environment variable to the env.d file.

Package-Manager: portage-2.0.51.19

5 files changed, 21 insertions, 10 deletions

diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog
index 617f3d733a84..4bdb9bab145e 100644
--- a/sci-biology/ncbi-tools/ChangeLog
+++ b/sci-biology/ncbi-tools/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/ncbi-tools
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.9 2005/03/02 23:28:35 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.10 2005/03/06 14:44:42 ribosome Exp $
+
+*ncbi-tools-20041020-r1 (06 Mar 2005)
+
+  06 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +files/21ncbi-r1,
+  +ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20041020.ebuild:
+  Added the "BLASTMAT" environment variable to the env.d file.
 
   02 Mar 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20041020.ebuild:
   Stable ppc-macos
diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
index 6411aa4e39b8..1d860c9a0acc 100644
--- a/sci-biology/ncbi-tools/Manifest
+++ b/sci-biology/ncbi-tools/Manifest
@@ -1,8 +1,9 @@
-MD5 c864b99b600d97e2bb297c4ea2a2c1ed ChangeLog 4893
-MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
+MD5 735961b29fe64ff54d6cd599f460eebd ncbi-tools-20041020-r1.ebuild 5631
 MD5 df68881e88897a468a256e50ff3ea0c4 ncbi-tools-20040616.ebuild 5780
-MD5 6ec7d13c4bd3cf2da55f888d5493a8cf ncbi-tools-20041020.ebuild 5652
-MD5 756db6700c84d3b303bfc3d0a28871de files/21ncbi 166
+MD5 197db519dece5e752e39b3bc002cf7c7 ChangeLog 5133
+MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
 MD5 23986a001c85eb8c2c319aacfa9cb40c files/ncbirc 33
+MD5 6fa8c1b5254e9c217c399c949bc75f45 files/digest-ncbi-tools-20041020-r1 144
 MD5 6e3486cc782a091aa528a3e3f01192fc files/digest-ncbi-tools-20040616 144
-MD5 6fa8c1b5254e9c217c399c949bc75f45 files/digest-ncbi-tools-20041020 144
+MD5 a5f54430f6f7422d75320e91068cae0b files/21ncbi-r1 232
+MD5 756db6700c84d3b303bfc3d0a28871de files/21ncbi 166
diff --git a/sci-biology/ncbi-tools/files/21ncbi-r1 b/sci-biology/ncbi-tools/files/21ncbi-r1
new file mode 100644
index 000000000000..d4de68e6081a
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/21ncbi-r1
@@ -0,0 +1,6 @@
+# Location of the formatdb data sets
+BLASTDB="/usr/share/ncbi/formatdb"
+# Location of the BLAST matrixes.
+BLASTMAT="/usr/share/ncbi/data"
+# Location of the ".ncbi.rc" file which sets the default path for shared data.
+NCBI=/etc/ncbi
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020-r1
index de3d6e86a474..de3d6e86a474 100644
--- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020
+++ b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020-r1
diff --git a/sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild
index 9e08507f07ef..f81037cbf6ce 100644
--- a/sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild
+++ b/sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild
@@ -1,6 +1,6 @@
 # Copyright 1999-2005 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild,v 1.4 2005/03/02 23:28:35 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild,v 1.1 2005/03/06 14:44:42 ribosome Exp $
 
 inherit flag-o-matic toolchain-funcs
 
@@ -165,7 +165,5 @@ src_install() {
 	newins ${FILESDIR}/ncbirc .ncbirc
 
 	# Env file to set the location of the config file and BLAST databases.
-	dodir /etc/env.d
-	insinto /etc/env.d
-	doins ${FILESDIR}/21ncbi
+	newenvd ${FILESDIR}/21ncbi-r1 21ncbi
 }