From 0e7c04c4231721ec864a720d3b1f77bd35dd6bdd Mon Sep 17 00:00:00 2001
From: Olivier Fisette <ribosome@gentoo.org>
Date: Sun, 6 Mar 2005 14:44:42 +0000
Subject: Added the "BLASTMAT" environment variable to the env.d file.
 Package-Manager: portage-2.0.51.19

---
 sci-biology/ncbi-tools/ChangeLog                   |   8 +-
 sci-biology/ncbi-tools/Manifest                    |  11 +-
 sci-biology/ncbi-tools/files/21ncbi-r1             |   6 +
 .../ncbi-tools/files/digest-ncbi-tools-20041020    |   2 -
 .../ncbi-tools/files/digest-ncbi-tools-20041020-r1 |   2 +
 .../ncbi-tools/ncbi-tools-20041020-r1.ebuild       | 169 ++++++++++++++++++++
 sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild  | 171 ---------------------
 7 files changed, 190 insertions(+), 179 deletions(-)
 create mode 100644 sci-biology/ncbi-tools/files/21ncbi-r1
 delete mode 100644 sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020
 create mode 100644 sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020-r1
 create mode 100644 sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild
 delete mode 100644 sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild

(limited to 'sci-biology/ncbi-tools')

diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog
index 617f3d733a84..4bdb9bab145e 100644
--- a/sci-biology/ncbi-tools/ChangeLog
+++ b/sci-biology/ncbi-tools/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/ncbi-tools
 # Copyright 2000-2005 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.9 2005/03/02 23:28:35 j4rg0n Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.10 2005/03/06 14:44:42 ribosome Exp $
+
+*ncbi-tools-20041020-r1 (06 Mar 2005)
+
+  06 Mar 2005; Olivier Fisette <ribosome@gentoo.org> +files/21ncbi-r1,
+  +ncbi-tools-20041020-r1.ebuild, -ncbi-tools-20041020.ebuild:
+  Added the "BLASTMAT" environment variable to the env.d file.
 
   02 Mar 2005; Lina Pezzella <j4rg0n@gentoo.org> ncbi-tools-20041020.ebuild:
   Stable ppc-macos
diff --git a/sci-biology/ncbi-tools/Manifest b/sci-biology/ncbi-tools/Manifest
index 6411aa4e39b8..1d860c9a0acc 100644
--- a/sci-biology/ncbi-tools/Manifest
+++ b/sci-biology/ncbi-tools/Manifest
@@ -1,8 +1,9 @@
-MD5 c864b99b600d97e2bb297c4ea2a2c1ed ChangeLog 4893
-MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
+MD5 735961b29fe64ff54d6cd599f460eebd ncbi-tools-20041020-r1.ebuild 5631
 MD5 df68881e88897a468a256e50ff3ea0c4 ncbi-tools-20040616.ebuild 5780
-MD5 6ec7d13c4bd3cf2da55f888d5493a8cf ncbi-tools-20041020.ebuild 5652
-MD5 756db6700c84d3b303bfc3d0a28871de files/21ncbi 166
+MD5 197db519dece5e752e39b3bc002cf7c7 ChangeLog 5133
+MD5 e8b4df3df76800c376905734d8043cfa metadata.xml 216
 MD5 23986a001c85eb8c2c319aacfa9cb40c files/ncbirc 33
+MD5 6fa8c1b5254e9c217c399c949bc75f45 files/digest-ncbi-tools-20041020-r1 144
 MD5 6e3486cc782a091aa528a3e3f01192fc files/digest-ncbi-tools-20040616 144
-MD5 6fa8c1b5254e9c217c399c949bc75f45 files/digest-ncbi-tools-20041020 144
+MD5 a5f54430f6f7422d75320e91068cae0b files/21ncbi-r1 232
+MD5 756db6700c84d3b303bfc3d0a28871de files/21ncbi 166
diff --git a/sci-biology/ncbi-tools/files/21ncbi-r1 b/sci-biology/ncbi-tools/files/21ncbi-r1
new file mode 100644
index 000000000000..d4de68e6081a
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/21ncbi-r1
@@ -0,0 +1,6 @@
+# Location of the formatdb data sets
+BLASTDB="/usr/share/ncbi/formatdb"
+# Location of the BLAST matrixes.
+BLASTMAT="/usr/share/ncbi/data"
+# Location of the ".ncbi.rc" file which sets the default path for shared data.
+NCBI=/etc/ncbi
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020
deleted file mode 100644
index de3d6e86a474..000000000000
--- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020
+++ /dev/null
@@ -1,2 +0,0 @@
-MD5 3f82bce2a3ce549f055ff989a4b825ed ncbi-tools-20041020.tar.gz 13867811
-MD5 c0860f787d95623b72fba58dbf1b60c5 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020-r1 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020-r1
new file mode 100644
index 000000000000..de3d6e86a474
--- /dev/null
+++ b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20041020-r1
@@ -0,0 +1,2 @@
+MD5 3f82bce2a3ce549f055ff989a4b825ed ncbi-tools-20041020.tar.gz 13867811
+MD5 c0860f787d95623b72fba58dbf1b60c5 ncbi-tools-sdk-doc.tar.bz2 263568
diff --git a/sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild
new file mode 100644
index 000000000000..f81037cbf6ce
--- /dev/null
+++ b/sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild
@@ -0,0 +1,169 @@
+# Copyright 1999-2005 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20041020-r1.ebuild,v 1.1 2005/03/06 14:44:42 ribosome Exp $
+
+inherit flag-o-matic toolchain-funcs
+
+DESCRIPTION="Development toolkit and applications (BLAST, entrez, ddv, udv, sequin...) for computational biology"
+LICENSE="public-domain"
+HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
+SRC_URI="mirror://gentoo/${P}.tar.gz
+	doc? ( mirror://gentoo/${PN}-sdk-doc.tar.bz2 )"
+
+SLOT="0"
+KEYWORDS="x86 ~ppc ~sparc ~alpha ~amd64 ppc-macos"
+IUSE="doc X"
+
+DEPEND="app-shells/tcsh
+	dev-lang/perl
+	media-libs/libpng
+	X? ( virtual/x11
+		x11-libs/openmotif
+	)"
+
+S=${WORKDIR}/ncbi
+
+pkg_setup() {
+	echo
+	ewarn 'It is important to note that the NCBI tools (especially the X'
+	ewarn 'applications) are known to have compilation and run-time'
+	ewarn 'problems when compiled with agressive compilation flags. The'
+	ewarn '"-O3" flag is filtered by the ebuild on the x86 architecture if'
+	ewarn 'X support is enabled. If you experience difficulties with this'
+	ewarn 'package and use agressive "CFLAGS", lower the "CFLAGS" and try'
+	ewarn 'to install the NCBI tools again.'
+	echo
+}
+
+src_unpack() {
+	unpack ${A}
+
+	if ! use X; then
+		cd ${S}/make
+		sed -e "s:\#set HAVE_OGL=0:set HAVE_OGL=0:" \
+			-e "s:\#set HAVE_MOTIF=0:set HAVE_MOTIF=0:" \
+			-i makedis.csh || die
+	else
+		if use x86; then
+			# X applications segfault on startup on x86 with -O3.
+			replace-flags '-O3' '-O2'
+		fi
+	fi
+
+	# Apply user C flags...
+	cd ${S}/platform
+	# ... on x86...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O3 -mcpu=pentiumpro/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O3 -mcpu=pentiumpro/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i linux-x86.ncbi.mk || die
+	# ... on alpha...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O3 -mieee/NCBI_LDFLAGS1 = -mieee ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O3 -mieee/NCBI_OPTFLAG = -mieee ${CFLAGS}/" \
+		-i linux-alpha.ncbi.mk || die
+	# ... on hppa...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O2/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O2/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i hppalinux.ncbi.mk || die
+	# ... on ppc...
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O2/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O2/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i ppclinux.ncbi.mk || die
+	# ... on generic Linux.
+	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
+		-e "s/NCBI_LDFLAGS1 = -O3/NCBI_LDFLAGS1 = ${CFLAGS}/" \
+		-e "s/NCBI_OPTFLAG = -O3/NCBI_OPTFLAG = ${CFLAGS}/" \
+		-i linux.ncbi.mk || die
+
+	# Put in our MAKEOPTS (doesn't work).
+	# sed -e "s:make \$MFLG:make ${MAKEOPTS}:" -i ncbi/make/makedis.csh
+
+	# Set C compiler...
+	# ... on x86...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux-x86.ncbi.mk || die
+	# ... on alpha...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux-alpha.ncbi.mk || die
+	# ... on hppa...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" hppalinux.ncbi.mk || die
+	# ... on ppc...
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" ppclinux.ncbi.mk || die
+	# ... on generic Linux.
+	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux.ncbi.mk || die
+}
+
+src_compile() {
+	cd ${WORKDIR}
+	ncbi/make/makedis.csh || die
+	mkdir ${S}/cgi
+	mkdir ${S}/real
+	mv ${S}/bin/*.cgi ${S}/cgi
+	mv ${S}/bin/*.REAL ${S}/real
+}
+
+src_install() {
+	dobin ${S}/bin/*
+	dolib ${S}/lib/*
+	mkdir -p ${D}/usr/include/ncbi
+	cp -RL ${S}/include/* ${D}/usr/include/ncbi
+
+	# TODO: Web apps
+	#insinto /usr/share/ncbi/lib/cgi
+	#doins ${S}/cgi/*
+	#insinto /usr/share/ncbi/lib/real
+	#doins ${S}/real/*
+	# TODO: Add support for wwwblast.
+
+	# Basic documentation
+	dodoc ${S}/{README,VERSION,doc/{*.txt,README.asn2xml}}
+	newdoc ${S}/doc/fa2htgs/README README.fa2htgs
+	newdoc ${S}/config/README README.config
+	newdoc ${S}/network/encrypt/README README.encrypt
+	newdoc ${S}/network/nsclilib/readme README.nsclilib
+	newdoc ${S}/sequin/README README.sequin
+	doman ${S}/doc/man/*
+
+	# Hypertext user documentation
+	dohtml ${S}/{README.html,doc/{*.html *.gif}}
+	insinto /usr/share/doc/${PF}/html/blast
+	doins ${S}/doc/blast/*
+
+	# Developer documentation
+	if use doc; then
+		# "socks" documentation
+		SOCKS="network/socks/socks.cstc.4.2"
+		insinto /usr/share/doc/${PF}/socks
+		doins ${S}/${SOCKS}/{CHANGES,How_to_SOCKSify,README.{1st,4.{0,1,2},DK},What_are_the_risks,What_SOCKS_expects}
+		newins ${S}/${SOCKS}/libident/README README.libident
+		doins ${S}/${SOCKS}/sockd/sockd.conf.sample
+		doman ${S}/${SOCKS}/{doc/*.{1,5,8},libident/ident.3}
+		# "regexp" documentation
+		insinto /usr/share/doc/${PF}/regexp
+		doins ${S}/regexp/doc/{AUTHORS,NEWS,README,Tech.Notes,*.txt}
+		insinto /usr/share/doc/${PF}/regexp/html
+		doins ${S}/regexp/doc/*.html
+		doman ${S}/regexp/doc/*.{1,3}
+		# Hypertext SDK documentation
+		insinto /usr/share/doc/${PF}/html/sdk
+		doins ${WORKDIR}/${PN}-sdk-doc/*
+		# Demo programs
+		mkdir ${D}/usr/share/ncbi
+		mv ${S}/demo ${D}/usr/share/ncbi/demo
+		mv ${S}/regexp/demo ${D}/usr/share/ncbi/demo/regexp
+		mv ${S}/regexp/test ${D}/usr/share/ncbi/demo/regexp/test
+	fi
+
+	# Shared data (similarity matrices and such) and database directory.
+	insinto /usr/share/ncbi/data
+	doins ${S}/data/*
+	dodir /usr/share/ncbi/formatdb
+
+	# Default config file to set the path for shared data.
+	insinto /etc/ncbi
+	newins ${FILESDIR}/ncbirc .ncbirc
+
+	# Env file to set the location of the config file and BLAST databases.
+	newenvd ${FILESDIR}/21ncbi-r1 21ncbi
+}
diff --git a/sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild
deleted file mode 100644
index 9e08507f07ef..000000000000
--- a/sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild
+++ /dev/null
@@ -1,171 +0,0 @@
-# Copyright 1999-2005 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20041020.ebuild,v 1.4 2005/03/02 23:28:35 j4rg0n Exp $
-
-inherit flag-o-matic toolchain-funcs
-
-DESCRIPTION="Development toolkit and applications (BLAST, entrez, ddv, udv, sequin...) for computational biology"
-LICENSE="public-domain"
-HOMEPAGE="http://www.ncbi.nlm.nih.gov/"
-SRC_URI="mirror://gentoo/${P}.tar.gz
-	doc? ( mirror://gentoo/${PN}-sdk-doc.tar.bz2 )"
-
-SLOT="0"
-KEYWORDS="x86 ~ppc ~sparc ~alpha ~amd64 ppc-macos"
-IUSE="doc X"
-
-DEPEND="app-shells/tcsh
-	dev-lang/perl
-	media-libs/libpng
-	X? ( virtual/x11
-		x11-libs/openmotif
-	)"
-
-S=${WORKDIR}/ncbi
-
-pkg_setup() {
-	echo
-	ewarn 'It is important to note that the NCBI tools (especially the X'
-	ewarn 'applications) are known to have compilation and run-time'
-	ewarn 'problems when compiled with agressive compilation flags. The'
-	ewarn '"-O3" flag is filtered by the ebuild on the x86 architecture if'
-	ewarn 'X support is enabled. If you experience difficulties with this'
-	ewarn 'package and use agressive "CFLAGS", lower the "CFLAGS" and try'
-	ewarn 'to install the NCBI tools again.'
-	echo
-}
-
-src_unpack() {
-	unpack ${A}
-
-	if ! use X; then
-		cd ${S}/make
-		sed -e "s:\#set HAVE_OGL=0:set HAVE_OGL=0:" \
-			-e "s:\#set HAVE_MOTIF=0:set HAVE_MOTIF=0:" \
-			-i makedis.csh || die
-	else
-		if use x86; then
-			# X applications segfault on startup on x86 with -O3.
-			replace-flags '-O3' '-O2'
-		fi
-	fi
-
-	# Apply user C flags...
-	cd ${S}/platform
-	# ... on x86...
-	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
-		-e "s/NCBI_LDFLAGS1 = -O3 -mcpu=pentiumpro/NCBI_LDFLAGS1 = ${CFLAGS}/" \
-		-e "s/NCBI_OPTFLAG = -O3 -mcpu=pentiumpro/NCBI_OPTFLAG = ${CFLAGS}/" \
-		-i linux-x86.ncbi.mk || die
-	# ... on alpha...
-	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
-		-e "s/NCBI_LDFLAGS1 = -O3 -mieee/NCBI_LDFLAGS1 = -mieee ${CFLAGS}/" \
-		-e "s/NCBI_OPTFLAG = -O3 -mieee/NCBI_OPTFLAG = -mieee ${CFLAGS}/" \
-		-i linux-alpha.ncbi.mk || die
-	# ... on hppa...
-	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
-		-e "s/NCBI_LDFLAGS1 = -O2/NCBI_LDFLAGS1 = ${CFLAGS}/" \
-		-e "s/NCBI_OPTFLAG = -O2/NCBI_OPTFLAG = ${CFLAGS}/" \
-		-i hppalinux.ncbi.mk || die
-	# ... on ppc...
-	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
-		-e "s/NCBI_LDFLAGS1 = -O2/NCBI_LDFLAGS1 = ${CFLAGS}/" \
-		-e "s/NCBI_OPTFLAG = -O2/NCBI_OPTFLAG = ${CFLAGS}/" \
-		-i ppclinux.ncbi.mk || die
-	# ... on generic Linux.
-	sed -e "s/NCBI_CFLAGS1 = -c/NCBI_CFLAGS1 = -c ${CFLAGS}/" \
-		-e "s/NCBI_LDFLAGS1 = -O3/NCBI_LDFLAGS1 = ${CFLAGS}/" \
-		-e "s/NCBI_OPTFLAG = -O3/NCBI_OPTFLAG = ${CFLAGS}/" \
-		-i linux.ncbi.mk || die
-
-	# Put in our MAKEOPTS (doesn't work).
-	# sed -e "s:make \$MFLG:make ${MAKEOPTS}:" -i ncbi/make/makedis.csh
-
-	# Set C compiler...
-	# ... on x86...
-	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux-x86.ncbi.mk || die
-	# ... on alpha...
-	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux-alpha.ncbi.mk || die
-	# ... on hppa...
-	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" hppalinux.ncbi.mk || die
-	# ... on ppc...
-	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" ppclinux.ncbi.mk || die
-	# ... on generic Linux.
-	sed -i -e "s/NCBI_CC = gcc/NCBI_CC = $(tc-getCC)/" linux.ncbi.mk || die
-}
-
-src_compile() {
-	cd ${WORKDIR}
-	ncbi/make/makedis.csh || die
-	mkdir ${S}/cgi
-	mkdir ${S}/real
-	mv ${S}/bin/*.cgi ${S}/cgi
-	mv ${S}/bin/*.REAL ${S}/real
-}
-
-src_install() {
-	dobin ${S}/bin/*
-	dolib ${S}/lib/*
-	mkdir -p ${D}/usr/include/ncbi
-	cp -RL ${S}/include/* ${D}/usr/include/ncbi
-
-	# TODO: Web apps
-	#insinto /usr/share/ncbi/lib/cgi
-	#doins ${S}/cgi/*
-	#insinto /usr/share/ncbi/lib/real
-	#doins ${S}/real/*
-	# TODO: Add support for wwwblast.
-
-	# Basic documentation
-	dodoc ${S}/{README,VERSION,doc/{*.txt,README.asn2xml}}
-	newdoc ${S}/doc/fa2htgs/README README.fa2htgs
-	newdoc ${S}/config/README README.config
-	newdoc ${S}/network/encrypt/README README.encrypt
-	newdoc ${S}/network/nsclilib/readme README.nsclilib
-	newdoc ${S}/sequin/README README.sequin
-	doman ${S}/doc/man/*
-
-	# Hypertext user documentation
-	dohtml ${S}/{README.html,doc/{*.html *.gif}}
-	insinto /usr/share/doc/${PF}/html/blast
-	doins ${S}/doc/blast/*
-
-	# Developer documentation
-	if use doc; then
-		# "socks" documentation
-		SOCKS="network/socks/socks.cstc.4.2"
-		insinto /usr/share/doc/${PF}/socks
-		doins ${S}/${SOCKS}/{CHANGES,How_to_SOCKSify,README.{1st,4.{0,1,2},DK},What_are_the_risks,What_SOCKS_expects}
-		newins ${S}/${SOCKS}/libident/README README.libident
-		doins ${S}/${SOCKS}/sockd/sockd.conf.sample
-		doman ${S}/${SOCKS}/{doc/*.{1,5,8},libident/ident.3}
-		# "regexp" documentation
-		insinto /usr/share/doc/${PF}/regexp
-		doins ${S}/regexp/doc/{AUTHORS,NEWS,README,Tech.Notes,*.txt}
-		insinto /usr/share/doc/${PF}/regexp/html
-		doins ${S}/regexp/doc/*.html
-		doman ${S}/regexp/doc/*.{1,3}
-		# Hypertext SDK documentation
-		insinto /usr/share/doc/${PF}/html/sdk
-		doins ${WORKDIR}/${PN}-sdk-doc/*
-		# Demo programs
-		mkdir ${D}/usr/share/ncbi
-		mv ${S}/demo ${D}/usr/share/ncbi/demo
-		mv ${S}/regexp/demo ${D}/usr/share/ncbi/demo/regexp
-		mv ${S}/regexp/test ${D}/usr/share/ncbi/demo/regexp/test
-	fi
-
-	# Shared data (similarity matrices and such) and database directory.
-	insinto /usr/share/ncbi/data
-	doins ${S}/data/*
-	dodir /usr/share/ncbi/formatdb
-
-	# Default config file to set the path for shared data.
-	insinto /etc/ncbi
-	newins ${FILESDIR}/ncbirc .ncbirc
-
-	# Env file to set the location of the config file and BLAST databases.
-	dodir /etc/env.d
-	insinto /etc/env.d
-	doins ${FILESDIR}/21ncbi
-}
-- 
cgit v1.2.3-65-gdbad