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| author |   Kacper Kowalik <xarthisius@gentoo.org> | 2010-06-20 16:55:14 +0000 |
|---|---|---|
| committer | Kacper Kowalik <xarthisius@gentoo.org> | 2010-06-20 16:55:14 +0000 |
| commit | 6364c6e239bbbf87a9c2f7bf70c9e8debf19dce6 (patch) | |
| tree | c6530e63f759109db9cb6f1f900292e95747eca6 /sci-biology/blossoc | |
| parent | Use proper security terms. (diff) | |
| download | historical-6364c6e239bbbf87a9c2f7bf70c9e8debf19dce6.tar.gz historical-6364c6e239bbbf87a9c2f7bf70c9e8debf19dce6.tar.bz2 historical-6364c6e239bbbf87a9c2f7bf70c9e8debf19dce6.zip | |
Fixing build with gcc-4.3. Thanks Sebastian Luther <SebastianLuther@gmx.de> for report and patch
Package-Manager: portage-2.1.8.3/cvs/Linux x86_64
Diffstat (limited to 'sci-biology/blossoc')
| -rw-r--r-- | sci-biology/blossoc/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/blossoc/Manifest | 15 | ||||
| -rw-r--r-- | sci-biology/blossoc/blossoc-1.4.0.ebuild | 7 | ||||
| -rw-r--r-- | sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch | 15 |
4 files changed, 35 insertions, 11 deletions
diff --git a/sci-biology/blossoc/ChangeLog b/sci-biology/blossoc/ChangeLog index d97265a52b2e..5be8ff808687 100644 --- a/sci-biology/blossoc/ChangeLog +++ b/sci-biology/blossoc/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/blossoc -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/ChangeLog,v 1.3 2009/05/25 19:57:41 maekke Exp $ +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/ChangeLog,v 1.4 2010/06/20 16:55:14 xarthisius Exp $ + + 20 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> blossoc-1.4.0.ebuild, + +files/blossoc-1.4.0-gcc43.patch: + Fixing build with gcc-4.3. Thanks Sebastian Luther + <SebastianLuther@gmx.de> for report and patch 25 May 2009; Markus Meier <maekke@gentoo.org> blossoc-1.4.0.ebuild: amd64/x86 stable, bug #269969 diff --git a/sci-biology/blossoc/Manifest b/sci-biology/blossoc/Manifest index b96c5a799487..f45c573444cb 100644 --- a/sci-biology/blossoc/Manifest +++ b/sci-biology/blossoc/Manifest @@ -1,14 +1,17 @@ -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 +AUX blossoc-1.4.0-gcc43.patch 299 RMD160 194d510ae000df135b03216fffe5b101e344910f SHA1 0f769a147741ab4354de092e523c9e4f76063fb8 SHA256 282b4e9db955371d2f03051ea12d29ddd4298b4ce5185b1107b4e48bebd063bb DIST blossoc-1.4.0.tar.gz 194885 RMD160 3964953cb4dba5c22b7dacb7efe37c056346bdcb SHA1 c85915fca0af1458e42231a04a0ab2af5986082f SHA256 b23f51349f72f31263b8aca162c7590a5f52b72fd5e0d91b4a2591098ff5bdbe -EBUILD blossoc-1.4.0.ebuild 748 RMD160 4420b2b44737601e0d4c0d61ff7a8f0d2722d7ca SHA1 6cafb8b7ffa35bb06d6e6013c281bb7b0845d9be SHA256 0c36f140b85e15cfab0ee981ff4e10fcf4e8dbfaf413756cba6baa2aa90475bd -MISC ChangeLog 520 RMD160 2faccb8471e039001de3b5031b96e20d5d42c493 SHA1 58ce1b510ce1a55aaa6a116724b4620a416f31ad SHA256 527991575604f2d70bf2704633a2d31c40e04aa216b1e86caa3361926c31d09b +EBUILD blossoc-1.4.0.ebuild 798 RMD160 dd5965f8a8a20630ca95437f0d1719ce38bf4dd0 SHA1 f77f80bd4470bf7f72d7ff195a1eff38b8f37d83 SHA256 c091b928d0bed5cbe24f2a2f828b2eae162c4fd6bb0a194ff1ff9a035500bd29 +MISC ChangeLog 738 RMD160 76a93223e543f90b09fb1644a77b7776c88a2319 SHA1 51b36c891e5de902fa78f53121e550097766e0f4 SHA256 3fa4a09ec38f03f99f33d1eadff8209f30ee8bb23171e03c29907e067b98917a MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) +Version: GnuPG v2.0.15 (GNU/Linux) -iEYEARECAAYFAkoa+EQACgkQkKaRLQcq0GJ34gCfY0wziYdA1XT9cnLFoMvC8qET -2p0AmgKztdm1kRCdnpJ7q309Tz06LX7/ -=e9sY +iJwEAQECAAYFAkweR/0ACgkQIiMqcbOVdxSnyAP/cMMORX3pvTZ99pJEhlbqrTLb +hN6AHYQQlt/uX/6N9Xt2LQ9raqZh8dCuexxZLldGUrOAgPPHORE2PDIqezlC/I/D +jB6E2L3LNA7bkzSNwdhCMa3P3Wb4o/jw2QXQPPnySfs1Wb5pdfvABibZeKo/AqKy +oqns+ErQEGxtEKJpA7g= +=dkHD -----END PGP SIGNATURE----- diff --git a/sci-biology/blossoc/blossoc-1.4.0.ebuild b/sci-biology/blossoc/blossoc-1.4.0.ebuild index 00439ae28961..833c79d571b1 100644 --- a/sci-biology/blossoc/blossoc-1.4.0.ebuild +++ b/sci-biology/blossoc/blossoc-1.4.0.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/blossoc-1.4.0.ebuild,v 1.3 2009/05/25 19:57:41 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/blossoc-1.4.0.ebuild,v 1.4 2010/06/20 16:55:14 xarthisius Exp $ EAPI="2" -inherit autotools +inherit autotools eutils DESCRIPTION="A linkage disequilibrium association mapping tool" HOMEPAGE="http://www.daimi.au.dk/~mailund/Blossoc/" @@ -22,6 +22,7 @@ RDEPEND="${DEPEND}" src_prepare() { sed -i '/TESTS += first_test.sh/ d' "${S}/Makefile.am" || die + epatch "${FILESDIR}"/${P}-gcc43.patch eautoreconf } diff --git a/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch b/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch new file mode 100644 index 000000000000..d8e354c1745f --- /dev/null +++ b/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch @@ -0,0 +1,15 @@ +Fixes build with >=GCC-4.3 + +http://bugs.gentoo.org/show_bug.cgi?id=292949 + +Patch written by Sebastian Luther <SebastianLuther@gmx.de> +--- pph.cc ++++ pph.cc +@@ -23,6 +23,7 @@ + */ + + #include "pph.hh" ++#include <cstdio> + #include <cmath> + #include <snpfile/matrix.hh> + using namespace BiRC::SNPFile; |