diff options
| -rw-r--r-- | sci-biology/blossoc/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/blossoc/Manifest | 15 | ||||
| -rw-r--r-- | sci-biology/blossoc/blossoc-1.4.0.ebuild | 7 | ||||
| -rw-r--r-- | sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch | 15 | ||||
| -rw-r--r-- | sci-biology/snpfile/Manifest | 16 |
5 files changed, 50 insertions, 12 deletions
diff --git a/sci-biology/blossoc/ChangeLog b/sci-biology/blossoc/ChangeLog index d97265a52b2e..5be8ff808687 100644 --- a/sci-biology/blossoc/ChangeLog +++ b/sci-biology/blossoc/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/blossoc -# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/ChangeLog,v 1.3 2009/05/25 19:57:41 maekke Exp $ +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/ChangeLog,v 1.4 2010/06/20 16:55:14 xarthisius Exp $ + + 20 Jun 2010; Kacper Kowalik <xarthisius@gentoo.org> blossoc-1.4.0.ebuild, + +files/blossoc-1.4.0-gcc43.patch: + Fixing build with gcc-4.3. Thanks Sebastian Luther + <SebastianLuther@gmx.de> for report and patch 25 May 2009; Markus Meier <maekke@gentoo.org> blossoc-1.4.0.ebuild: amd64/x86 stable, bug #269969 diff --git a/sci-biology/blossoc/Manifest b/sci-biology/blossoc/Manifest index b96c5a799487..f45c573444cb 100644 --- a/sci-biology/blossoc/Manifest +++ b/sci-biology/blossoc/Manifest @@ -1,14 +1,17 @@ -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA1 +AUX blossoc-1.4.0-gcc43.patch 299 RMD160 194d510ae000df135b03216fffe5b101e344910f SHA1 0f769a147741ab4354de092e523c9e4f76063fb8 SHA256 282b4e9db955371d2f03051ea12d29ddd4298b4ce5185b1107b4e48bebd063bb DIST blossoc-1.4.0.tar.gz 194885 RMD160 3964953cb4dba5c22b7dacb7efe37c056346bdcb SHA1 c85915fca0af1458e42231a04a0ab2af5986082f SHA256 b23f51349f72f31263b8aca162c7590a5f52b72fd5e0d91b4a2591098ff5bdbe -EBUILD blossoc-1.4.0.ebuild 748 RMD160 4420b2b44737601e0d4c0d61ff7a8f0d2722d7ca SHA1 6cafb8b7ffa35bb06d6e6013c281bb7b0845d9be SHA256 0c36f140b85e15cfab0ee981ff4e10fcf4e8dbfaf413756cba6baa2aa90475bd -MISC ChangeLog 520 RMD160 2faccb8471e039001de3b5031b96e20d5d42c493 SHA1 58ce1b510ce1a55aaa6a116724b4620a416f31ad SHA256 527991575604f2d70bf2704633a2d31c40e04aa216b1e86caa3361926c31d09b +EBUILD blossoc-1.4.0.ebuild 798 RMD160 dd5965f8a8a20630ca95437f0d1719ce38bf4dd0 SHA1 f77f80bd4470bf7f72d7ff195a1eff38b8f37d83 SHA256 c091b928d0bed5cbe24f2a2f828b2eae162c4fd6bb0a194ff1ff9a035500bd29 +MISC ChangeLog 738 RMD160 76a93223e543f90b09fb1644a77b7776c88a2319 SHA1 51b36c891e5de902fa78f53121e550097766e0f4 SHA256 3fa4a09ec38f03f99f33d1eadff8209f30ee8bb23171e03c29907e067b98917a MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 -----BEGIN PGP SIGNATURE----- -Version: GnuPG v2.0.11 (GNU/Linux) +Version: GnuPG v2.0.15 (GNU/Linux) -iEYEARECAAYFAkoa+EQACgkQkKaRLQcq0GJ34gCfY0wziYdA1XT9cnLFoMvC8qET -2p0AmgKztdm1kRCdnpJ7q309Tz06LX7/ -=e9sY +iJwEAQECAAYFAkweR/0ACgkQIiMqcbOVdxSnyAP/cMMORX3pvTZ99pJEhlbqrTLb +hN6AHYQQlt/uX/6N9Xt2LQ9raqZh8dCuexxZLldGUrOAgPPHORE2PDIqezlC/I/D +jB6E2L3LNA7bkzSNwdhCMa3P3Wb4o/jw2QXQPPnySfs1Wb5pdfvABibZeKo/AqKy +oqns+ErQEGxtEKJpA7g= +=dkHD -----END PGP SIGNATURE----- diff --git a/sci-biology/blossoc/blossoc-1.4.0.ebuild b/sci-biology/blossoc/blossoc-1.4.0.ebuild index 00439ae28961..833c79d571b1 100644 --- a/sci-biology/blossoc/blossoc-1.4.0.ebuild +++ b/sci-biology/blossoc/blossoc-1.4.0.ebuild @@ -1,10 +1,10 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2010 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/blossoc-1.4.0.ebuild,v 1.3 2009/05/25 19:57:41 maekke Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/blossoc/blossoc-1.4.0.ebuild,v 1.4 2010/06/20 16:55:14 xarthisius Exp $ EAPI="2" -inherit autotools +inherit autotools eutils DESCRIPTION="A linkage disequilibrium association mapping tool" HOMEPAGE="http://www.daimi.au.dk/~mailund/Blossoc/" @@ -22,6 +22,7 @@ RDEPEND="${DEPEND}" src_prepare() { sed -i '/TESTS += first_test.sh/ d' "${S}/Makefile.am" || die + epatch "${FILESDIR}"/${P}-gcc43.patch eautoreconf } diff --git a/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch b/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch new file mode 100644 index 000000000000..d8e354c1745f --- /dev/null +++ b/sci-biology/blossoc/files/blossoc-1.4.0-gcc43.patch @@ -0,0 +1,15 @@ +Fixes build with >=GCC-4.3 + +http://bugs.gentoo.org/show_bug.cgi?id=292949 + +Patch written by Sebastian Luther <SebastianLuther@gmx.de> +--- pph.cc ++++ pph.cc +@@ -23,6 +23,7 @@ + */ + + #include "pph.hh" ++#include <cstdio> + #include <cmath> + #include <snpfile/matrix.hh> + using namespace BiRC::SNPFile; diff --git a/sci-biology/snpfile/Manifest b/sci-biology/snpfile/Manifest index 21a7fb2c61a2..dd9087c775b9 100644 --- a/sci-biology/snpfile/Manifest +++ b/sci-biology/snpfile/Manifest @@ -1,5 +1,19 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + AUX snpfile-2.0.1-gcc44.patch 387 RMD160 0a31eb4741dd824ab35c7559e89787ee589e3788 SHA1 a2abee114666c397f8f2d6c987ad3648d4aa37cf SHA256 349c6594759f16da2602415ff217c37bb677e2508437497b508c91ab4668956a +AUX snpfile-2.0.1-gentoo.diff 20200 RMD160 f756f9f181769f6c909375b8e5c1aeec116879f1 SHA1 63aaf9bc84aa8c74ee862d4ed4ea311097b45122 SHA256 d8020eeec0ad593983ee07a13814a509fc6a36839ff28be28387405b985a3a3b DIST snpfile-2.0.1.tar.gz 171854 RMD160 0d3f44bab5a59636aa4b1901c0ce5816b62a346a SHA1 d5f7c58540782d76a7aed9c13fc5bedab2d69a0b SHA256 71569e0dcd426447d1a5d215fb47615074a4c8d935cf70ef63c5f47a411b0b76 +EBUILD snpfile-2.0.1-r1.ebuild 823 RMD160 6f0a65c2a714e52e58706563f508b3e8b4c8bc9e SHA1 a98c0512466ebdeb8f4626fabf2e6a86a46e8fc0 SHA256 58fb5f9136d68e2614df6953da6297d7e78741c6d612718ca30ab5eb2a462598 EBUILD snpfile-2.0.1.ebuild 676 RMD160 e0519c79b1ed69b0541903c1ae72007a88746290 SHA1 c779886c1e6238ce7b86348f92b2a0e0cf8d4e76 SHA256 7f696bc551aa546e7225045b895452242779919cabed3b80d21aa8103ea232d9 -MISC ChangeLog 735 RMD160 8c75fd07550c2401634b74b2fd3f28fe23789e29 SHA1 1ee56969fb6c5793675de4d43c31f3ffd7b9cad7 SHA256 e834a5f98854ddd91838c55b74767fa209bf44536bacd5558f2a03cbcba900dd +MISC ChangeLog 979 RMD160 5f428fd0dd196beda292cddf0fa5a553ac63c6bb SHA1 b4f6d7b163fb016832c7eb4263d4684931640066 SHA256 559fa918a1ded927e15ef38873b96f9761547ad0f08465a28c7c9dbcb3a9312a MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.15 (GNU/Linux) + +iJwEAQECAAYFAkweSMsACgkQIiMqcbOVdxR88wP8CjgiAoVZoOHHXB2aD9yRUzWD +2ykBFXV57hb8xZt2/3Dr/Q6Ceg3uNm11dGyoV1g5iXsC0L0aRio1HLNebApJvRlE +t8Qm417LOgRKqF6mDahU9Xkwah/wLiAg2xjv6i6GK9kysLagd+lB75FFWsNiowfn +6bA6SnhhsXDb8VFhc1g= +=4QrV +-----END PGP SIGNATURE----- |