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# Copyright 1999-2023 Gentoo Authors
# Distributed under the terms of the GNU General Public License v2
EAPI=8
PYTHON_COMPAT=( python3_{10..10} )
inherit distutils-r1
DESCRIPTION="Extract reads from BAM files, normalize, draw figures, convert BAM to bigWig"
HOMEPAGE="https://github.com/deeptools/deepTools"
SRC_URI="https://github.com/deeptools/deepTools/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="BSD"
SLOT="0"
KEYWORDS="~amd64 ~x86"
# TODO: fix this
RESTRICT="test"
RDEPEND="
>=sci-biology/deeptools-intervals-0.1.8[${PYTHON_USEDEP}]
>=dev-python/numpy-1.9.0[${PYTHON_USEDEP}]
>=dev-python/numpydoc-0.5[${PYTHON_USEDEP}]
>=dev-python/scipy-0.17.0[${PYTHON_USEDEP}]
dev-python/plotly[${PYTHON_USEDEP}]
>=dev-python/py2bit-0.2.0[${PYTHON_USEDEP}]
>=dev-python/pyBigWig-0.2.1[${PYTHON_USEDEP}]
>=sci-biology/pysam-0.14.0[${PYTHON_USEDEP}]
>=dev-python/matplotlib-3.1.0[${PYTHON_USEDEP}]
"
S="${WORKDIR}/deepTools-${PV}"
distutils_enable_sphinx docs dev-python/sphinx-rtd-theme dev-python/sphinx-argparse
#distutils_enable_tests nose
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