1 files changed, 40 insertions, 0 deletions
diff --git a/sci-biology/subread/subread-2.0.1.ebuild b/sci-biology/subread/subread-2.0.1.ebuild
new file mode 100644
index 000000000..18f11e5a6
--- /dev/null
+++ b/sci-biology/subread/subread-2.0.1.ebuild
@@ -0,0 +1,40 @@
+# Copyright 1999-2021 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=7
+
+DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts"
+HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/" # no https
+if [ "$PV" == "9999" ]; then
+	inherit subversion
+	ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk"
+	KEYWORDS=""
+else
+	SRC_URI="https://sourceforge.net/projects/subread/files/${P}/${P}-source.tar.gz"
+	KEYWORDS=""
+fi
+
+LICENSE="GPL-3"
+SLOT="0"
+
+DEPEND="sys-libs/zlib"
+RDEPEND="${DEPEND}"
+
+S="${S}"-source
+
+src_prepare(){
+	default
+	sed -e "s/-mtune=core2//g" -e "s/-O9//g" -i src/Makefile.Linux || die
+}
+
+src_compile(){
+	cd src || die
+	emake -f Makefile.Linux
+}
+
+src_install(){
+	dobin bin/[a-s]* bin/utilities/*
+	dodoc README.txt doc/SubreadUsersGuide.pdf
+	insinto  /usr/share/subread
+	doins annotation/*.txt
+}