diff options
| -rw-r--r-- | profiles/package.mask | 1 | ||||
| -rw-r--r-- | sci-biology/subread/Manifest | 2 | ||||
| -rw-r--r-- | sci-biology/subread/subread-2.0.1.ebuild (renamed from sci-biology/subread/subread-1.4.6.ebuild) | 15 |
3 files changed, 8 insertions, 10 deletions
diff --git a/profiles/package.mask b/profiles/package.mask index f727ddc7a..6938af860 100644 --- a/profiles/package.mask +++ b/profiles/package.mask @@ -107,4 +107,3 @@ sci-biology/snphylo sci-biology/SPAdes sci-biology/sra_sdk sci-biology/staden_doc -sci-biology/subread diff --git a/sci-biology/subread/Manifest b/sci-biology/subread/Manifest index dc31ef636..48a9f7ca3 100644 --- a/sci-biology/subread/Manifest +++ b/sci-biology/subread/Manifest @@ -1 +1 @@ -DIST subread-1.4.6-source.tar.gz 20173034 BLAKE2B 28bac4ae6b2aad2b765f2849f18dd9cfc9dbe8541b5c05943f313c01fc7b5ed5dcf10e6ed6bdb4738814b86a5273dc1a55d23638c47cc407c76de45110ff8813 SHA512 48636244d814ac985ba7ca2d1e54882b59c47145392958faab5680104ec2b35c7106d6351dfac675bfb5c5b8372e43585c603f76d830e3ddb25b6747a28b0132 +DIST subread-2.0.1-source.tar.gz 23260381 BLAKE2B 498f898c9b5f5e0819fb7ae0a1407805fb3dc34cf5a07b4354d1493315a9e9190735916fb5c5587f972a67a7d47880e31dc3cc627e271dd2e452e856f5fd79c1 SHA512 e7548c426f75a5705a7c0538787007c5d3f23e4a4561022f192b3219f333483a02312986936cbbfcc8f9afa24cb4d91a1cc62fbebb6c6aef957568d5d8fa3505 diff --git a/sci-biology/subread/subread-1.4.6.ebuild b/sci-biology/subread/subread-2.0.1.ebuild index aa8290e1a..18f11e5a6 100644 --- a/sci-biology/subread/subread-1.4.6.ebuild +++ b/sci-biology/subread/subread-2.0.1.ebuild @@ -1,23 +1,21 @@ -# Copyright 1999-2020 Gentoo Authors +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 - -[ "$PV" == "9999" ] && inherit subversion +EAPI=7 DESCRIPTION="NGS suite for analysis of mapped reads, summary of exon/intron/gene counts" HOMEPAGE="http://bioinf.wehi.edu.au/featureCounts/" # no https if [ "$PV" == "9999" ]; then + inherit subversion ESVN_REPO_URI="https://subread.svn.sourceforge.net/svnroot/subread/trunk" - #KEYWORDS="~amd64 ~x86" + KEYWORDS="" else - SRC_URI="https://sourceforge.net/projects/subread/files/"${P}"/"${P}"-source.tar.gz" - KEYWORDS="~amd64 ~x86" + SRC_URI="https://sourceforge.net/projects/subread/files/${P}/${P}-source.tar.gz" + KEYWORDS="" fi LICENSE="GPL-3" SLOT="0" -IUSE="" DEPEND="sys-libs/zlib" RDEPEND="${DEPEND}" @@ -25,6 +23,7 @@ RDEPEND="${DEPEND}" S="${S}"-source src_prepare(){ + default sed -e "s/-mtune=core2//g" -e "s/-O9//g" -i src/Makefile.Linux || die } |