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| author |   Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-05 19:36:36 +0100 |
|---|---|---|
| committer | Andrew Ammerlaan <andrewammerlaan@riseup.net> | 2021-03-05 19:36:36 +0100 |
| commit | cbd0aa94ac67bb0371412b7dd392ae89fba4f6bd (patch) | |
| tree | fb985a0fc8569cd80605e58a63ab54295ea8508e /sci-biology/VarScan | |
| parent | sci-biology/StarORF: EAPI bump (diff) | |
| download | sci-cbd0aa94ac67bb0371412b7dd392ae89fba4f6bd.tar.gz sci-cbd0aa94ac67bb0371412b7dd392ae89fba4f6bd.tar.bz2 sci-cbd0aa94ac67bb0371412b7dd392ae89fba4f6bd.zip | |
sci-biology/VarScan: EAPI bump, vers bump, fix fetch
Package-Manager: Portage-3.0.16, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@riseup.net>
Diffstat (limited to 'sci-biology/VarScan')
| -rw-r--r-- | sci-biology/VarScan/Manifest | 3 | ||||
| -rw-r--r-- | sci-biology/VarScan/VarScan-2.4.2.ebuild | 36 | ||||
| -rw-r--r-- | sci-biology/VarScan/VarScan-2.4.4.ebuild (renamed from sci-biology/VarScan/VarScan-2.4.3.ebuild) | 7 |
3 files changed, 4 insertions, 42 deletions
diff --git a/sci-biology/VarScan/Manifest b/sci-biology/VarScan/Manifest index 08287bf59..f5e3e9abe 100644 --- a/sci-biology/VarScan/Manifest +++ b/sci-biology/VarScan/Manifest @@ -1,2 +1 @@ -DIST VarScan.v2.4.2.source.jar 205503 SHA256 d65c3a761ef3ed25544a62b0885373628d3f4f644dde165cd47448e5c175c791 SHA512 92a31b22574144fdb9800b6b3bf016d151119f7e147b47fb9063d1f772a817867265057cd7895fd5a450ef998956e0871d52fb929acf00866f4224586efdce4c WHIRLPOOL a6e3336a55109744dd307556909f105ac4ea6a6a7c9c6a28b657b2a38a0f6da0152519275f6078c667fe4c03fe56c4b86e452a3cbcd5170ff55855d9a859770c -DIST VarScan.v2.4.3.source.jar 206397 BLAKE2B da6834f57954faf6c3db4fe8adb2e278e709569165a202efc9ac5994d6755a975890c91f3430621afac65c0081cd2ee4443a1a16d5efa3125b3701d7f586f001 SHA512 620a3a41b1e99fe7e1d6ca629287de26bff517efb70a42610abbc66092c935775dc4b2ad10a68c38e69b3063cdadb5794355219f6bf20809761804038713117c +DIST VarScan.v2.4.4.source.jar 208377 BLAKE2B 1e9205e3ea5b962562ff94ed40aa7d0d2f1a800cb427c402f99cdea87fe56e2e4e3ee1f3e74321a7ccf122ab2b7c47cd0bc2e6d99a1d5ea487c4d76e9add514e SHA512 980a80627a0dd91c5d16b8bab59ad51f6a528eb7b0e427eab6949ae12f4fa3fe2d5d4edba15f1e8b4fd607126b60acbbca87f5c31e6480e6ccb7aa21fd6936a8 diff --git a/sci-biology/VarScan/VarScan-2.4.2.ebuild b/sci-biology/VarScan/VarScan-2.4.2.ebuild deleted file mode 100644 index 4add5f679..000000000 --- a/sci-biology/VarScan/VarScan-2.4.2.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit java-pkg-2 - -DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations, CNA, SNP calls)" -HOMEPAGE="http://varscan.sourceforge.net/" - -# binary -#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar -#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar" -SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.source.jar" - -LICENSE="Non-profit-OSL-3.0" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=" - >=virtual/jdk-1.5:* - !sci-biology/VarScan-bin" -RDEPEND=">=virtual/jre-1.5:* - sci-biology/bam-readcount" - -S="${WORKDIR}"/net/sf/varscan - -src_compile(){ - javac *.java -} - -src_install(){ - java-pkg_newjar "${DISTDIR}"/${PN}.v${PV}.source.jar ${PN}.source.jar - java-pkg_dolauncher VarScan -} diff --git a/sci-biology/VarScan/VarScan-2.4.3.ebuild b/sci-biology/VarScan/VarScan-2.4.4.ebuild index 0b3fc2ad5..72a3c94df 100644 --- a/sci-biology/VarScan/VarScan-2.4.3.ebuild +++ b/sci-biology/VarScan/VarScan-2.4.4.ebuild @@ -1,7 +1,7 @@ -# Copyright 1999-2017 Gentoo Foundation +# Copyright 1999-2021 Gentoo Authors # Distributed under the terms of the GNU General Public License v2 -EAPI=5 +EAPI=7 inherit java-pkg-2 @@ -10,12 +10,11 @@ HOMEPAGE="http://varscan.sourceforge.net/" # binary #https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.jar -SRC_URI="https://github.com/dkoboldt/varscan/blob/master/VarScan.v2.4.3.source.jar?raw=true -> ${PN}.v${PV}.source.jar" +SRC_URI="https://github.com/dkoboldt/varscan/blob/master/VarScan.v${PV}.source.jar?raw=true -> ${PN}.v${PV}.source.jar" LICENSE="Non-profit-OSL-3.0" SLOT="0" KEYWORDS="~amd64" -IUSE="" DEPEND=" >=virtual/jdk-1.5:* |