diff options
Diffstat (limited to 'sci-biology/VarScan/VarScan-2.4.2.ebuild')
| -rw-r--r-- | sci-biology/VarScan/VarScan-2.4.2.ebuild | 36 |
1 files changed, 0 insertions, 36 deletions
diff --git a/sci-biology/VarScan/VarScan-2.4.2.ebuild b/sci-biology/VarScan/VarScan-2.4.2.ebuild deleted file mode 100644 index 4add5f679..000000000 --- a/sci-biology/VarScan/VarScan-2.4.2.ebuild +++ /dev/null @@ -1,36 +0,0 @@ -# Copyright 1999-2017 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 - -EAPI=5 - -inherit java-pkg-2 - -DESCRIPTION="Variant detection (germline, multi-sample, somatic mutations, CNA, SNP calls)" -HOMEPAGE="http://varscan.sourceforge.net/" - -# binary -#http://downloads.sourceforge.net/project/varscan/VarScan.v2.3.7.jar -#SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.jar" -SRC_URI="http://downloads.sourceforge.net/project/varscan/${PN}.v${PV}.source.jar" - -LICENSE="Non-profit-OSL-3.0" -SLOT="0" -KEYWORDS="~amd64" -IUSE="" - -DEPEND=" - >=virtual/jdk-1.5:* - !sci-biology/VarScan-bin" -RDEPEND=">=virtual/jre-1.5:* - sci-biology/bam-readcount" - -S="${WORKDIR}"/net/sf/varscan - -src_compile(){ - javac *.java -} - -src_install(){ - java-pkg_newjar "${DISTDIR}"/${PN}.v${PV}.source.jar ${PN}.source.jar - java-pkg_dolauncher VarScan -} |