diff options
Diffstat (limited to 'sci-biology')
-rw-r--r-- | sci-biology/primer3/ChangeLog | 6 | ||||
-rw-r--r-- | sci-biology/primer3/primer3-2.2.3.ebuild | 48 | ||||
-rw-r--r-- | sci-biology/primer3/primer3-2.3.0.ebuild | 47 |
3 files changed, 5 insertions, 96 deletions
diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog index 86a017843a12..2f139b7818c4 100644 --- a/sci-biology/primer3/ChangeLog +++ b/sci-biology/primer3/ChangeLog @@ -1,6 +1,10 @@ # ChangeLog for sci-biology/primer3 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.38 2012/12/16 19:51:49 ago Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.39 2012/12/17 08:12:46 jlec Exp $ + + 17 Dec 2012; Justin Lecher <jlec@gentoo.org> -primer3-2.2.3.ebuild, + -primer3-2.3.0.ebuild: + Drop old 16 Dec 2012; Agostino Sarubbo <ago@gentoo.org> primer3-2.3.1.ebuild: Stable for ppc, wrt bug #446992 diff --git a/sci-biology/primer3/primer3-2.2.3.ebuild b/sci-biology/primer3/primer3-2.2.3.ebuild deleted file mode 100644 index e11dfd6c6bb2..000000000000 --- a/sci-biology/primer3/primer3-2.2.3.ebuild +++ /dev/null @@ -1,48 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.2.3.ebuild,v 1.5 2011/12/03 10:58:16 hwoarang Exp $ - -EAPI="3" - -inherit toolchain-funcs - -DESCRIPTION="Primer Design for PCR reactions" -HOMEPAGE="http://primer3.sourceforge.net/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" - -SLOT="0" -LICENSE="GPL-2" -IUSE="" -KEYWORDS="amd64 ~ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris" - -DEPEND="dev-lang/perl" -RDEPEND="" - -src_prepare() { - if [[ ${CHOST} == *-darwin* ]]; then - sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile || die - fi - perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die - sed \ - -e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \ - -e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \ - -e 's:CFLAGS:CXXFLAGS:g' \ - -i src/Makefile || die -} - -src_compile() { - emake -C src || die -} - -src_test () { - emake -C test || die -} - -src_install () { - dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core} || die \ - "Could not install program." - dodoc src/release_notes.txt example primer3_manual.htm || die \ - "Could not install documentation." - insinto /opt/primer3_config - doins -r src/primer3_config/* primer3*settings.txt || die -} diff --git a/sci-biology/primer3/primer3-2.3.0.ebuild b/sci-biology/primer3/primer3-2.3.0.ebuild deleted file mode 100644 index 40778dce474a..000000000000 --- a/sci-biology/primer3/primer3-2.3.0.ebuild +++ /dev/null @@ -1,47 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild,v 1.3 2012/07/19 12:21:52 jlec Exp $ - -EAPI=4 - -inherit toolchain-funcs - -DESCRIPTION="Primer Design for PCR reactions" -HOMEPAGE="http://primer3.sourceforge.net/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz" - -SLOT="0" -LICENSE="GPL-2" -IUSE="" -KEYWORDS="~amd64 ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris" - -DEPEND="dev-lang/perl" -RDEPEND="" - -src_prepare() { - if [[ ${CHOST} == *-darwin* ]]; then - sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile || die - fi - perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die - sed \ - -e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \ - -e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \ - -e 's:CFLAGS:CXXFLAGS:g' \ - -i src/Makefile || die -} - -src_compile() { - emake -C src -} - -src_test () { - emake -C test -} - -src_install () { - dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core} - dodoc src/release_notes.txt example - insinto /opt/primer3_config - doins -r src/primer3_config/* primer3*settings.txt - dohtml primer3_manual.htm -} |