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authorJustin Lecher <jlec@gentoo.org>2012-12-17 08:12:46 +0000
committerJustin Lecher <jlec@gentoo.org>2012-12-17 08:12:46 +0000
commited73f2832fd737e4989ff60d613bee34ba83529c (patch)
treebc61e3f6640225f9119980d9a576823ffdde54ea /sci-biology
parentsci-chemistry/scala: Drop old (diff)
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sci-biology/primer3: Drop old
(Portage version: 2.2.0_alpha148/cvs/Linux x86_64, signed Manifest commit with key 70EB7916)
Diffstat (limited to 'sci-biology')
-rw-r--r--sci-biology/primer3/ChangeLog6
-rw-r--r--sci-biology/primer3/primer3-2.2.3.ebuild48
-rw-r--r--sci-biology/primer3/primer3-2.3.0.ebuild47
3 files changed, 5 insertions, 96 deletions
diff --git a/sci-biology/primer3/ChangeLog b/sci-biology/primer3/ChangeLog
index 86a017843a12..2f139b7818c4 100644
--- a/sci-biology/primer3/ChangeLog
+++ b/sci-biology/primer3/ChangeLog
@@ -1,6 +1,10 @@
# ChangeLog for sci-biology/primer3
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.38 2012/12/16 19:51:49 ago Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/ChangeLog,v 1.39 2012/12/17 08:12:46 jlec Exp $
+
+ 17 Dec 2012; Justin Lecher <jlec@gentoo.org> -primer3-2.2.3.ebuild,
+ -primer3-2.3.0.ebuild:
+ Drop old
16 Dec 2012; Agostino Sarubbo <ago@gentoo.org> primer3-2.3.1.ebuild:
Stable for ppc, wrt bug #446992
diff --git a/sci-biology/primer3/primer3-2.2.3.ebuild b/sci-biology/primer3/primer3-2.2.3.ebuild
deleted file mode 100644
index e11dfd6c6bb2..000000000000
--- a/sci-biology/primer3/primer3-2.2.3.ebuild
+++ /dev/null
@@ -1,48 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.2.3.ebuild,v 1.5 2011/12/03 10:58:16 hwoarang Exp $
-
-EAPI="3"
-
-inherit toolchain-funcs
-
-DESCRIPTION="Primer Design for PCR reactions"
-HOMEPAGE="http://primer3.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-KEYWORDS="amd64 ~ppc ~ppc64 ~sparc x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
-
-DEPEND="dev-lang/perl"
-RDEPEND=""
-
-src_prepare() {
- if [[ ${CHOST} == *-darwin* ]]; then
- sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile || die
- fi
- perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die
- sed \
- -e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \
- -e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \
- -e 's:CFLAGS:CXXFLAGS:g' \
- -i src/Makefile || die
-}
-
-src_compile() {
- emake -C src || die
-}
-
-src_test () {
- emake -C test || die
-}
-
-src_install () {
- dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core} || die \
- "Could not install program."
- dodoc src/release_notes.txt example primer3_manual.htm || die \
- "Could not install documentation."
- insinto /opt/primer3_config
- doins -r src/primer3_config/* primer3*settings.txt || die
-}
diff --git a/sci-biology/primer3/primer3-2.3.0.ebuild b/sci-biology/primer3/primer3-2.3.0.ebuild
deleted file mode 100644
index 40778dce474a..000000000000
--- a/sci-biology/primer3/primer3-2.3.0.ebuild
+++ /dev/null
@@ -1,47 +0,0 @@
-# Copyright 1999-2012 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/primer3/primer3-2.3.0.ebuild,v 1.3 2012/07/19 12:21:52 jlec Exp $
-
-EAPI=4
-
-inherit toolchain-funcs
-
-DESCRIPTION="Primer Design for PCR reactions"
-HOMEPAGE="http://primer3.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${P}.tar.gz"
-
-SLOT="0"
-LICENSE="GPL-2"
-IUSE=""
-KEYWORDS="~amd64 ppc ~ppc64 ~sparc ~x86 ~amd64-linux ~x86-linux ~ppc-macos ~sparc-solaris"
-
-DEPEND="dev-lang/perl"
-RDEPEND=""
-
-src_prepare() {
- if [[ ${CHOST} == *-darwin* ]]; then
- sed -e "s:LIBOPTS ='-static':LIBOPTS =:" -i Makefile || die
- fi
- perl -i -ne 's/\$\(CPP\)/'$(tc-getCXX)'/; print unless /^(CC|CPP|CFLAGS|LDFLAGS)\s*=/' src/Makefile || die
- sed \
- -e '/oligotm/s:-o $@:$(LDFLAGS) -o $@:g' \
- -e '/long_seq_tm_test/s:-o $@:$(LDFLAGS) -o $@:g' \
- -e 's:CFLAGS:CXXFLAGS:g' \
- -i src/Makefile || die
-}
-
-src_compile() {
- emake -C src
-}
-
-src_test () {
- emake -C test
-}
-
-src_install () {
- dobin src/{long_seq_tm_test,ntdpal,oligotm,primer3_core}
- dodoc src/release_notes.txt example
- insinto /opt/primer3_config
- doins -r src/primer3_config/* primer3*settings.txt
- dohtml primer3_manual.htm
-}