diff options
Diffstat (limited to 'sci-biology/rnaview')
| -rw-r--r-- | sci-biology/rnaview/ChangeLog | 16 | ||||
| -rw-r--r-- | sci-biology/rnaview/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/rnaview/files/digest-rnaview-1 | 1 | ||||
| -rw-r--r-- | sci-biology/rnaview/metadata.xml | 17 | ||||
| -rw-r--r-- | sci-biology/rnaview/rnaview-1.ebuild | 38 |
5 files changed, 76 insertions, 0 deletions
diff --git a/sci-biology/rnaview/ChangeLog b/sci-biology/rnaview/ChangeLog new file mode 100644 index 000000000000..5605bb81c19b --- /dev/null +++ b/sci-biology/rnaview/ChangeLog @@ -0,0 +1,16 @@ +# ChangeLog for app-sci/rnaview +# Copyright 1999-2004 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/ChangeLog,v 1.1 2004/12/23 21:39:36 ribosome Exp $ + +*rnaview-1 (23 Dec 2004) + + 23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +rnaview-1.ebuild: + Moved from app-sci/rnaview to sci-biology/rnaview. + +*rnaview-1 (07 Nov 2004) + + 07 Nov 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml, + +rnaview-1.ebuild: + Initial import. + diff --git a/sci-biology/rnaview/Manifest b/sci-biology/rnaview/Manifest new file mode 100644 index 000000000000..48afa09f0847 --- /dev/null +++ b/sci-biology/rnaview/Manifest @@ -0,0 +1,4 @@ +MD5 874d7ee5673f7b0ad5a4c1a71213a4af rnaview-1.ebuild 923 +MD5 995416f2f5afad50eedb54186ccf50b3 ChangeLog 339 +MD5 683a4745e6be4f5ae83f3250fcad1502 metadata.xml 659 +MD5 df467fedf575ec68666db53ab00bf26b files/digest-rnaview-1 62 diff --git a/sci-biology/rnaview/files/digest-rnaview-1 b/sci-biology/rnaview/files/digest-rnaview-1 new file mode 100644 index 000000000000..b40944ef6e02 --- /dev/null +++ b/sci-biology/rnaview/files/digest-rnaview-1 @@ -0,0 +1 @@ +MD5 c83022b5957aef547895300b4217bf36 rnaview-1.tar.bz2 519911 diff --git a/sci-biology/rnaview/metadata.xml b/sci-biology/rnaview/metadata.xml new file mode 100644 index 000000000000..8c0ca89678ae --- /dev/null +++ b/sci-biology/rnaview/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>ribosome@gentoo.org</email> + <name>Olivier Fisette</name> + </maintainer> + <herd>sci</herd> + <longdescription> + The RNAView program generates 2-dimensional displays of RNA/DNA + secondary structures with tertiary interactions. RNAView + automatically identifies and classifies the types of base pairs that + are formed in nucleic acid structures, fully implementing Leontis and + Westhof's (RNA (2001) 7, 499-512), convention for edge-to-edge + hydrogen bonding interactions. + </longdescription> +</pkgmetadata> diff --git a/sci-biology/rnaview/rnaview-1.ebuild b/sci-biology/rnaview/rnaview-1.ebuild new file mode 100644 index 000000000000..c4b21c6a41e1 --- /dev/null +++ b/sci-biology/rnaview/rnaview-1.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2004 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/rnaview-1.ebuild,v 1.1 2004/12/23 21:39:36 ribosome Exp $ + +inherit toolchain-funcs + +DESCRIPTION="Generates 2D displays of RNA/DNA secondary structures with tertiary interactions" +HOMEPAGE="http://beta-ndb.rutgers.edu/services/download/index.html#rnaview" +SRC_URI="mirror://gentoo/${P}.tar.bz2" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~x86" +IUSE="" + +src_unpack() { + unpack ${A} + cd ${S} + sed -i -e "s/CC = cc/CC = $(tc-getCC)/" Makefile + sed -i -e "s/CFLAGS =/CFLAGS = ${CFLAGS}/" Makefile +} + +src_compile() { + make clean + make || die + cd ${S}/rnaml2ps + make clean + make || die + cd ${S}/test + rm '.#t' +} + +src_install() { + dobin bin/rnaview rnaml2ps/rnaml2ps + dodoc README + mkdir -p ${D}/usr/share/${PN} + cp -r BASEPARS test ${D}/usr/share/${PN} +} |