Moved from app-sci/rnaview to sci-biology/rnaview.

5 files changed, 76 insertions, 0 deletions

diff --git a/sci-biology/rnaview/ChangeLog b/sci-biology/rnaview/ChangeLog
new file mode 100644
index 000000000000..5605bb81c19b
--- /dev/null
+++ b/sci-biology/rnaview/ChangeLog
@@ -0,0 +1,16 @@
+# ChangeLog for app-sci/rnaview
+# Copyright 1999-2004 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/ChangeLog,v 1.1 2004/12/23 21:39:36 ribosome Exp $
+
+*rnaview-1 (23 Dec 2004)
+
+  23 Dec 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +rnaview-1.ebuild:
+  Moved from app-sci/rnaview to sci-biology/rnaview.
+
+*rnaview-1 (07 Nov 2004)
+
+  07 Nov 2004; Olivier Fisette <ribosome@gentoo.org> +metadata.xml,
+  +rnaview-1.ebuild:
+  Initial import.
+
diff --git a/sci-biology/rnaview/Manifest b/sci-biology/rnaview/Manifest
new file mode 100644
index 000000000000..48afa09f0847
--- /dev/null
+++ b/sci-biology/rnaview/Manifest
@@ -0,0 +1,4 @@
+MD5 874d7ee5673f7b0ad5a4c1a71213a4af rnaview-1.ebuild 923
+MD5 995416f2f5afad50eedb54186ccf50b3 ChangeLog 339
+MD5 683a4745e6be4f5ae83f3250fcad1502 metadata.xml 659
+MD5 df467fedf575ec68666db53ab00bf26b files/digest-rnaview-1 62
diff --git a/sci-biology/rnaview/files/digest-rnaview-1 b/sci-biology/rnaview/files/digest-rnaview-1
new file mode 100644
index 000000000000..b40944ef6e02
--- /dev/null
+++ b/sci-biology/rnaview/files/digest-rnaview-1
@@ -0,0 +1 @@
+MD5 c83022b5957aef547895300b4217bf36 rnaview-1.tar.bz2 519911
diff --git a/sci-biology/rnaview/metadata.xml b/sci-biology/rnaview/metadata.xml
new file mode 100644
index 000000000000..8c0ca89678ae
--- /dev/null
+++ b/sci-biology/rnaview/metadata.xml
@@ -0,0 +1,17 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<maintainer>
+		<email>ribosome@gentoo.org</email>
+		<name>Olivier Fisette</name>
+	</maintainer>
+	<herd>sci</herd>
+	<longdescription>
+		The RNAView program generates 2-dimensional displays of RNA/DNA
+		secondary structures with tertiary interactions. RNAView
+		automatically identifies and classifies the types of base pairs that
+		are formed in nucleic acid structures, fully implementing Leontis and
+		Westhof's (RNA (2001) 7, 499-512), convention for edge-to-edge
+		hydrogen bonding interactions.
+	</longdescription>
+</pkgmetadata>
diff --git a/sci-biology/rnaview/rnaview-1.ebuild b/sci-biology/rnaview/rnaview-1.ebuild
new file mode 100644
index 000000000000..c4b21c6a41e1
--- /dev/null
+++ b/sci-biology/rnaview/rnaview-1.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2004 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/rnaview/rnaview-1.ebuild,v 1.1 2004/12/23 21:39:36 ribosome Exp $
+
+inherit toolchain-funcs
+
+DESCRIPTION="Generates 2D displays of RNA/DNA secondary structures with tertiary interactions"
+HOMEPAGE="http://beta-ndb.rutgers.edu/services/download/index.html#rnaview"
+SRC_URI="mirror://gentoo/${P}.tar.bz2"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE=""
+
+src_unpack() {
+	unpack ${A}
+	cd ${S}
+	sed -i -e "s/CC        = cc/CC        = $(tc-getCC)/" Makefile
+	sed -i -e "s/CFLAGS  =/CFLAGS  = ${CFLAGS}/" Makefile
+}
+
+src_compile() {
+	make clean
+	make || die
+	cd ${S}/rnaml2ps
+	make clean
+	make || die
+	cd ${S}/test
+	rm '.#t'
+}
+
+src_install() {
+	dobin bin/rnaview rnaml2ps/rnaml2ps
+	dodoc README
+	mkdir -p ${D}/usr/share/${PN}
+	cp -r BASEPARS test ${D}/usr/share/${PN}
+}