diff options
Diffstat (limited to 'sci-biology/paml')
| -rw-r--r-- | sci-biology/paml/ChangeLog | 9 | ||||
| -rw-r--r-- | sci-biology/paml/files/digest-paml-4a | 3 | ||||
| -rw-r--r-- | sci-biology/paml/paml-3.15.ebuild | 4 | ||||
| -rw-r--r-- | sci-biology/paml/paml-4a.ebuild | 40 |
4 files changed, 52 insertions, 4 deletions
diff --git a/sci-biology/paml/ChangeLog b/sci-biology/paml/ChangeLog index 94cfb9154e51..c2a2b9967f02 100644 --- a/sci-biology/paml/ChangeLog +++ b/sci-biology/paml/ChangeLog @@ -1,6 +1,11 @@ # ChangeLog for sci-biology/paml -# Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.1 2006/10/21 05:57:50 dberkholz Exp $ +# Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/ChangeLog,v 1.2 2007/11/22 13:26:59 markusle Exp $ + +*paml-4a (22 Nov 2007) + + 22 Nov 2007; Markus Dittrich <markusle@gentoo.org> +paml-4a.ebuild: + Version bump. See bug #191867. *paml-3.15 (21 Oct 2006) diff --git a/sci-biology/paml/files/digest-paml-4a b/sci-biology/paml/files/digest-paml-4a new file mode 100644 index 000000000000..dd55c75cab35 --- /dev/null +++ b/sci-biology/paml/files/digest-paml-4a @@ -0,0 +1,3 @@ +MD5 3cbe2e2ef633398e66443d08ccf16322 paml4a.tar.gz 2377543 +RMD160 5be2b6e82f0abc52e1e4251a0b8728e4cece684b paml4a.tar.gz 2377543 +SHA256 436968adfad51c0b9f28a5bc1196a5e123005b8e9c6df0c4200d791b7ed90f4e paml4a.tar.gz 2377543 diff --git a/sci-biology/paml/paml-3.15.ebuild b/sci-biology/paml/paml-3.15.ebuild index 7e2fa5e5d513..4c5ab262db60 100644 --- a/sci-biology/paml/paml-3.15.ebuild +++ b/sci-biology/paml/paml-3.15.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2006 Gentoo Foundation +# Copyright 1999-2007 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-3.15.ebuild,v 1.1 2006/10/21 05:57:50 dberkholz Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-3.15.ebuild,v 1.2 2007/11/22 13:26:59 markusle Exp $ inherit toolchain-funcs diff --git a/sci-biology/paml/paml-4a.ebuild b/sci-biology/paml/paml-4a.ebuild new file mode 100644 index 000000000000..ded1fad3745c --- /dev/null +++ b/sci-biology/paml/paml-4a.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2007 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/paml/paml-4a.ebuild,v 1.1 2007/11/22 13:26:59 markusle Exp $ + +inherit toolchain-funcs + +MY_PV="${PV:0:1}" +MY_P="${PN}${MY_PV}" +DESCRIPTION="Phylogenetic Analysis by Maximum Likelihood" +HOMEPAGE="http://abacus.gene.ucl.ac.uk/software/paml.html" +SRC_URI="http://abacus.gene.ucl.ac.uk/software/${PN}${PV}.tar.gz" +LICENSE="free-noncomm" +SLOT="0" +KEYWORDS="~x86" +IUSE="" +RDEPEND="" +DEPEND="${RDEPEND}" +S="${WORKDIR}/${MY_P}" + +src_compile() { + cd src + emake \ + -f Makefile.UNIX \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + || die "make failed" +} + +src_install() { + pushd "${S}"/src + dobin baseml codeml basemlg mcmctree pamp evolver yn00 chi2 + popd + dodoc README.txt doc/* + insinto /usr/share/${PN}/control + doins *.ctl || die "Failed to install control files" + insinto /usr/share/${PN}/dat + doins stewart* *.dat dat/* || die "Failed to install data files" + insinto /usr/share/${PN} + doins -r examples/ || die "Failed to install examples" +} |