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| author |   Olivier Fisette <ribosome@gentoo.org> | 2007-03-09 03:55:37 +0000 |
|---|---|---|
| committer | Olivier Fisette <ribosome@gentoo.org> | 2007-03-09 03:55:37 +0000 |
| commit | 353869e763f7c1725b9e0d4b4f1760405b516155 (patch) | |
| tree | 53a953f8c78db8476ea213084ee5766f0fabc286 /sci-biology/ncbi-tools | |
| parent | Add cdaudio, wav, nls use flags, bug 98576 (diff) | |
| download | gentoo-2-353869e763f7c1725b9e0d4b4f1760405b516155.tar.gz gentoo-2-353869e763f7c1725b9e0d4b4f1760405b516155.tar.bz2 gentoo-2-353869e763f7c1725b9e0d4b4f1760405b516155.zip | |
Install ans2all utility. Added support for compiling/installing arbitrary NCBI utilities. Pruned oldversion.
(Portage version: 2.1.2.2)
Diffstat (limited to 'sci-biology/ncbi-tools')
| -rw-r--r-- | sci-biology/ncbi-tools/ChangeLog | 12 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1 (renamed from sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015) | 0 | ||||
| -rw-r--r-- | sci-biology/ncbi-tools/ncbi-tools-20061015-r1.ebuild (renamed from sci-biology/ncbi-tools/ncbi-tools-20061015.ebuild) | 13 |
3 files changed, 19 insertions, 6 deletions
diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog index 189a7475f202..bf9b0254c9f7 100644 --- a/sci-biology/ncbi-tools/ChangeLog +++ b/sci-biology/ncbi-tools/ChangeLog @@ -1,6 +1,14 @@ # ChangeLog for sci-biology/ncbi-tools -# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.50 2006/11/03 02:53:38 ribosome Exp $ +# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.51 2007/03/09 03:55:37 ribosome Exp $ + +*ncbi-tools-20061015-r1 (09 Mar 2007) + + 09 Mar 2007; Olivier Fisette <ribosome@gentoo.org> + -ncbi-tools-20061015.ebuild, +ncbi-tools-20061015-r1.ebuild: + Install ans2all utility. Added support for compiling/installing arbitrary + NCBI utilities. Thanks to José María Fernández González + <jmfernandez@cnio.es> for his work (see bug #169822). Pruned old version. 03 Nov 2006; Olivier Fisette <ribosome@gentoo.org> -ncbi-tools-20050605-r2.ebuild: diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1 index 21bbf17addbb..21bbf17addbb 100644 --- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015 +++ b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1 diff --git a/sci-biology/ncbi-tools/ncbi-tools-20061015.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20061015-r1.ebuild index 9929a10dd286..377ae81f16c4 100644 --- a/sci-biology/ncbi-tools/ncbi-tools-20061015.ebuild +++ b/sci-biology/ncbi-tools/ncbi-tools-20061015-r1.ebuild @@ -1,6 +1,6 @@ -# Copyright 1999-2006 Gentoo Foundation +# Copyright 1999-2007 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20061015.ebuild,v 1.1 2006/11/03 02:04:56 ribosome Exp $ +# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20061015-r1.ebuild,v 1.1 2007/03/09 03:55:37 ribosome Exp $ inherit flag-o-matic toolchain-funcs eutils autotools @@ -24,6 +24,8 @@ DEPEND="app-shells/tcsh S="${WORKDIR}/ncbi" +EXTRA_VIB="asn2all asn2asn" + pkg_setup() { echo ewarn 'Please note that the NCBI toolkit (and especially the X' @@ -38,7 +40,7 @@ src_unpack() { unpack ${A} cd "${S}" - epatch "${FILESDIR}"/${PN}-asn2all.patch + epatch "${FILESDIR}"/${PN}-extra_vib.patch if use ppc64; then epatch "${FILESDIR}"/${PN}-lop.patch @@ -112,6 +114,7 @@ src_unpack() { } src_compile() { + export EXTRA_VIB cd "${WORKDIR}" ncbi/make/makedis.csh || die mkdir "${S}"/cgi @@ -130,7 +133,9 @@ src_compile() { src_install() { dobin "${S}"/bin/* || die "Failed to install binaries." - dobin "${S}"/build/asn2all || die "Failed to install binaries." + for i in ${EXTRA_VIB}; do + dobin "${S}"/build/${i} || die "Failed to install binaries." + done dolib "${S}"/lib/* || die "Failed to install libraries." mkdir -p "${D}"/usr/include/ncbi cp -RL "${S}"/include/* "${D}"/usr/include/ncbi || \ |