Install ans2all utility. Added support for compiling/installing arbitrary NCBI utilities. Pruned oldversion.

(Portage version: 2.1.2.2)

3 files changed, 19 insertions, 6 deletions

diff --git a/sci-biology/ncbi-tools/ChangeLog b/sci-biology/ncbi-tools/ChangeLog
index 189a7475f202..bf9b0254c9f7 100644
--- a/sci-biology/ncbi-tools/ChangeLog
+++ b/sci-biology/ncbi-tools/ChangeLog
@@ -1,6 +1,14 @@
 # ChangeLog for sci-biology/ncbi-tools
-# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.50 2006/11/03 02:53:38 ribosome Exp $
+# Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ChangeLog,v 1.51 2007/03/09 03:55:37 ribosome Exp $
+
+*ncbi-tools-20061015-r1 (09 Mar 2007)
+
+  09 Mar 2007; Olivier Fisette <ribosome@gentoo.org>
+  -ncbi-tools-20061015.ebuild, +ncbi-tools-20061015-r1.ebuild:
+  Install ans2all utility. Added support for compiling/installing arbitrary
+  NCBI utilities. Thanks to José María Fernández González
+  <jmfernandez@cnio.es> for his work (see bug #169822). Pruned old version.
 
   03 Nov 2006; Olivier Fisette <ribosome@gentoo.org>
   -ncbi-tools-20050605-r2.ebuild:
diff --git a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015 b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1
index 21bbf17addbb..21bbf17addbb 100644
--- a/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015
+++ b/sci-biology/ncbi-tools/files/digest-ncbi-tools-20061015-r1
diff --git a/sci-biology/ncbi-tools/ncbi-tools-20061015.ebuild b/sci-biology/ncbi-tools/ncbi-tools-20061015-r1.ebuild
index 9929a10dd286..377ae81f16c4 100644
--- a/sci-biology/ncbi-tools/ncbi-tools-20061015.ebuild
+++ b/sci-biology/ncbi-tools/ncbi-tools-20061015-r1.ebuild
@@ -1,6 +1,6 @@
-# Copyright 1999-2006 Gentoo Foundation
+# Copyright 1999-2007 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20061015.ebuild,v 1.1 2006/11/03 02:04:56 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools/ncbi-tools-20061015-r1.ebuild,v 1.1 2007/03/09 03:55:37 ribosome Exp $
 
 inherit flag-o-matic toolchain-funcs eutils autotools
 
@@ -24,6 +24,8 @@ DEPEND="app-shells/tcsh
 
 S="${WORKDIR}/ncbi"
 
+EXTRA_VIB="asn2all asn2asn"
+
 pkg_setup() {
 	echo
 	ewarn 'Please note that the NCBI toolkit (and especially the X'
@@ -38,7 +40,7 @@ src_unpack() {
 	unpack ${A}
 	cd "${S}"
 
-	epatch "${FILESDIR}"/${PN}-asn2all.patch
+	epatch "${FILESDIR}"/${PN}-extra_vib.patch
 
 	if use ppc64; then
 		epatch "${FILESDIR}"/${PN}-lop.patch
@@ -112,6 +114,7 @@ src_unpack() {
 }
 
 src_compile() {
+	export EXTRA_VIB
 	cd "${WORKDIR}"
 	ncbi/make/makedis.csh || die
 	mkdir "${S}"/cgi
@@ -130,7 +133,9 @@ src_compile() {
 
 src_install() {
 	dobin "${S}"/bin/* || die "Failed to install binaries."
-	dobin "${S}"/build/asn2all || die "Failed to install binaries."
+	for i in ${EXTRA_VIB}; do
+		dobin "${S}"/build/${i} || die "Failed to install binaries."
+	done
 	dolib "${S}"/lib/* || die "Failed to install libraries."
 	mkdir -p "${D}"/usr/include/ncbi
 	cp -RL "${S}"/include/* "${D}"/usr/include/ncbi || \