1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
|
{'description': {'en': 'Official Gentoo ebuild repository'},
'feed': ['https://cgit.gentoo.org/repo/gentoo.git/atom/'],
'homepage': 'https://gentoo.org/',
'name': 'gentoo',
'owner': [{'email': 'bug-wranglers@gentoo.org', 'type': 'project'}],
'quality': 'core',
'source': [{'type': 'rsync', 'uri': 'rsync://rsync.gentoo.org/gentoo-portage'},
{'type': 'git',
'uri': 'https://anongit.gentoo.org/git/repo/gentoo.git'},
{'type': 'git', 'uri': 'git://anongit.gentoo.org/repo/gentoo.git'},
{'type': 'git',
'uri': 'git+ssh://git@git.gentoo.org/repo/gentoo.git'}],
'status': 'official'}
pkgcore 0.12.8
$ pmaint --config /var/lib/repo-mirror-ci/data-sync/etc/portage sync gentoo
*** syncing gentoo
From https://anongit.gentoo.org/git/repo/gentoo
5e90bce8636..080be9315c7 master -> origin/master
Updating 5e90bce8636..080be9315c7
Fast-forward
app-i18n/man-pages-l10n/Manifest | 2 +-
...-4.12.0.ebuild => man-pages-l10n-4.12.1.ebuild} | 0
dev-libs/protobuf/protobuf-3.19.1.ebuild | 2 +-
dev-python/mypy/mypy-0.931.ebuild | 2 +-
dev-python/numpy/numpy-1.22.2.ebuild | 2 +-
.../protobuf-python/protobuf-python-3.19.1.ebuild | 2 +-
eclass/emboss-r2.eclass | 5 +-
eclass/emboss-r3.eclass | 131 +++++++++++++++++++++
...ebuild => embassy-cbstools-1.0.0.660-r1.ebuild} | 13 +-
...bassy-cbstools-1.0.0.650_fix-build-system.patch | 4 +-
...ld => embassy-clustalomega-1.1.0.660-r1.ebuild} | 13 +-
...bassy-clustalomega-1.1.0_fix-build-system.patch | 4 +-
...build => embassy-domainatrix-0.1.660-r1.ebuild} | 13 +-
...assy-domainatrix-0.1.650_fix-build-system.patch | 4 +-
...0.ebuild => embassy-domalign-0.1.660-r1.ebuild} | 13 +-
...embassy-domalign-0.1.650_fix-build-system.patch | 4 +-
....ebuild => embassy-domsearch-0.1.660-r1.ebuild} | 13 +-
...mbassy-domsearch-0.1.650_fix-build-system.patch | 4 +-
....660.ebuild => embassy-emnu-1.05.660-r1.ebuild} | 15 ++-
.../embassy-emnu-1.05.650_fix-build-system.patch | 4 +-
...60.ebuild => embassy-esim4-1.0.0.660-r1.ebuild} | 13 +-
.../embassy-esim4-1.0.0.650_fix-build-system.patch | 4 +-
...60.ebuild => embassy-hmmer-2.3.2.660-r1.ebuild} | 13 +-
.../embassy-hmmer-2.3.2.650_fix-build-system.patch | 4 +-
....ebuild => embassy-iprscan-4.3.1.660-r1.ebuild} | 13 +-
...mbassy-iprscan-4.3.1.650_fix-build-system.patch | 4 +-
....660.ebuild => embassy-mse-3.0.0.660-r1.ebuild} | 19 +--
.../embassy-mse-3.0.0.650_fix-build-system.patch | 4 +-
...ebuild => embassy-phylipnew-3.69.660-r1.ebuild} | 13 +-
...bassy-phylipnew-3.69.650_fix-build-system.patch | 4 +-
....ebuild => embassy-signature-0.1.660-r1.ebuild} | 13 +-
...mbassy-signature-0.1.650_fix-build-system.patch | 4 +-
....ebuild => embassy-structure-0.1.660-r1.ebuild} | 13 +-
...mbassy-structure-0.1.650_fix-build-system.patch | 4 +-
...0.660.ebuild => embassy-topo-2.0.660-r1.ebuild} | 13 +-
.../embassy-topo-2.0.650_fix-build-system.patch | 4 +-
...0.ebuild => embassy-vienna-1.7.2.660-r1.ebuild} | 13 +-
...embassy-vienna-1.7.2.650_fix-build-system.patch | 4 +-
sci-biology/emboss/Manifest | 2 +-
...boss-6.6.0-r1.ebuild => emboss-6.6.0-r2.ebuild} | 19 +--
sci-libs/libxc/Manifest | 3 -
sci-libs/libxc/libxc-5.1.0.ebuild | 40 -------
sci-libs/libxc/libxc-5.1.4.ebuild | 40 -------
sci-libs/libxc/libxc-5.1.6.ebuild | 40 -------
sci-libs/libxc/libxc-5.1.7.ebuild | 2 +-
45 files changed, 307 insertions(+), 248 deletions(-)
rename app-i18n/man-pages-l10n/{man-pages-l10n-4.12.0.ebuild => man-pages-l10n-4.12.1.ebuild} (100%)
create mode 100644 eclass/emboss-r3.eclass
rename sci-biology/embassy-cbstools/{embassy-cbstools-1.0.0.660.ebuild => embassy-cbstools-1.0.0.660-r1.ebuild} (70%)
rename sci-biology/embassy-clustalomega/{embassy-clustalomega-1.1.0.660.ebuild => embassy-clustalomega-1.1.0.660-r1.ebuild} (72%)
rename sci-biology/embassy-domainatrix/{embassy-domainatrix-0.1.660.ebuild => embassy-domainatrix-0.1.660-r1.ebuild} (70%)
rename sci-biology/embassy-domalign/{embassy-domalign-0.1.660.ebuild => embassy-domalign-0.1.660-r1.ebuild} (69%)
rename sci-biology/embassy-domsearch/{embassy-domsearch-0.1.660.ebuild => embassy-domsearch-0.1.660-r1.ebuild} (69%)
rename sci-biology/embassy-emnu/{embassy-emnu-1.05.660.ebuild => embassy-emnu-1.05.660-r1.ebuild} (72%)
rename sci-biology/embassy-esim4/{embassy-esim4-1.0.0.660.ebuild => embassy-esim4-1.0.0.660-r1.ebuild} (70%)
rename sci-biology/embassy-hmmer/{embassy-hmmer-2.3.2.660.ebuild => embassy-hmmer-2.3.2.660-r1.ebuild} (78%)
rename sci-biology/embassy-iprscan/{embassy-iprscan-4.3.1.660.ebuild => embassy-iprscan-4.3.1.660-r1.ebuild} (71%)
rename sci-biology/embassy-mse/{embassy-mse-3.0.0.660.ebuild => embassy-mse-3.0.0.660-r1.ebuild} (64%)
rename sci-biology/embassy-phylipnew/{embassy-phylipnew-3.69.660.ebuild => embassy-phylipnew-3.69.660-r1.ebuild} (74%)
rename sci-biology/embassy-signature/{embassy-signature-0.1.660.ebuild => embassy-signature-0.1.660-r1.ebuild} (69%)
rename sci-biology/embassy-structure/{embassy-structure-0.1.660.ebuild => embassy-structure-0.1.660-r1.ebuild} (69%)
rename sci-biology/embassy-topo/{embassy-topo-2.0.660.ebuild => embassy-topo-2.0.660-r1.ebuild} (69%)
rename sci-biology/embassy-vienna/{embassy-vienna-1.7.2.660.ebuild => embassy-vienna-1.7.2.660-r1.ebuild} (73%)
rename sci-biology/emboss/{emboss-6.6.0-r1.ebuild => emboss-6.6.0-r2.ebuild} (86%)
delete mode 100644 sci-libs/libxc/libxc-5.1.0.ebuild
delete mode 100644 sci-libs/libxc/libxc-5.1.4.ebuild
delete mode 100644 sci-libs/libxc/libxc-5.1.6.ebuild
*** synced gentoo
* Sync succeeded
$ git log --format=%ci -1
$ git show -q --pretty=format:%G? HEAD
$ pmaint --config /var/lib/repo-mirror-ci/data/etc/portage regen --use-local-desc --pkg-desc-index -t 32 gentoo
* Cache regenerated successfully
|