blob: 4b56c05793b50e686b87af62f058fca87a452af6 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
|
# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI=5
inherit eutils flag-o-matic fortran-2 toolchain-funcs versionator
MY_PV="$(replace_version_separator 2 .r)"
MY_P="T-COFFEE_distribution_Version_${MY_PV}"
DESCRIPTION="A multiple sequence alignment package"
HOMEPAGE="http://www.tcoffee.org/Projects_home_page/t_coffee_home_page.html"
SRC_URI="http://www.tcoffee.org/Packages/Stable/Version_${MY_PV}/${MY_P}.tar.gz"
LICENSE="GPL-2"
SLOT="0"
KEYWORDS="amd64 ppc ~ppc64 x86 ~amd64-linux ~x86-linux"
IUSE="examples"
RDEPEND="
sci-biology/clustalw
sci-chemistry/tm-align"
DEPEND=""
S="${WORKDIR}/${MY_P}"
die_compile() {
echo
eerror "If you experience an internal compiler error (consult the above"
eerror "messages), try compiling t-coffee using very modest compiler flags."
eerror "See bug #114745 on the Gentoo Bugzilla for more details."
die "Compilation failed"
}
src_prepare() {
epatch "${FILESDIR}"/${P}-flags.patch
}
src_compile() {
[[ $(gcc-version) == "3.4" ]] || \
[[ $(gcc-version) == "4.1" ]] && \
append-flags -fno-unit-at-a-time
emake \
CC="$(tc-getCC)" \
CFLAGS="${CFLAGS}" \
-C t_coffee_source t_coffee
}
src_install() {
dobin t_coffee_source/t_coffee
if use examples; then
insinto /usr/share/${PN}
doins -r example
fi
}
|
GitWeb
