blob: 53a8b66f918f6b916f8a8c656694048fcd76d593 (
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Makefile | 26 ++++++++++++++++++--------
1 file changed, 18 insertions(+), 8 deletions(-)
diff --git a/Makefile b/Makefile
index ae59abf..0d2788c 100644
--- a/Makefile
+++ b/Makefile
@@ -21,11 +21,12 @@
# FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
# DEALINGS IN THE SOFTWARE.
-CC = gcc
-CPPFLAGS = $(DFLAGS) $(INCLUDES)
-CFLAGS = -g -Wall -O2
-LDFLAGS =
-LDLIBS =
+CC ?= gcc
+CPPFLAGS += $(DFLAGS) $(INCLUDES)
+CFLAGS ?= -g -Wall -O2
+LDFLAGS +=
+LDLIBS +=
+BAMLIB ?= libbam.a
DFLAGS= -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -D_CURSES_LIB=1
LOBJS= bam_aux.o bam.o bam_import.o sam.o \
sam_header.o bam_plbuf.o
@@ -42,6 +43,7 @@ LIBCURSES= -lcurses # -lXCurses
prefix = /usr/local
exec_prefix = $(prefix)
bindir = $(exec_prefix)/bin
+bindir = $(exec_prefix)/lib
mandir = $(prefix)/share/man
man1dir = $(mandir)/man1
@@ -115,14 +117,22 @@ version.h:
.c.o:
$(CC) $(CFLAGS) $(CPPFLAGS) -c -o $@ $<
+$(LOBJS):
+ $(CC) $(CFLAGS) $(CPPFLAGS) -fPIC -c -o $@ $<
-lib:libbam.a
+
+lib:libbam.a libbam.so.1.0
libbam.a:$(LOBJS)
$(AR) -csru $@ $(LOBJS)
-samtools: $(AOBJS) libbam.a $(HTSLIB)
- $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) libbam.a $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm -lz
+libbam.so.1.0:$(LOBJS)
+ $(CC) $(LDFLAGS) -shared -Wl,--soname,$@ -o $@ $(LOBJS) $(HTSLIB) -lz
+ ln -sf $@ libbam.so.0
+ ln -sf $@ libbam.so
+
+samtools: $(AOBJS) $(HTSLIB) lib
+ $(CC) -pthread $(LDFLAGS) -o $@ $(AOBJS) $(BAMLIB) $(HTSLIB) $(LDLIBS) $(LIBCURSES) -lm -lz
bam_h = bam.h $(htslib_bgzf_h) $(htslib_sam_h)
bam2bcf_h = bam2bcf.h $(htslib_vcf_h) errmod.h
|
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