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# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
EAPI="2"
DESCRIPTION="A reference-guided aligner for next-generation sequencing technologies"
HOMEPAGE="https://code.google.com/p/mosaik-aligner/"
SRC_URI="https://mosaik-aligner.googlecode.com/files/Mosaik-${PV}-source.tar.bz2"
LICENSE="GPL-2"
SLOT="0"
IUSE=""
KEYWORDS="~amd64 ~x86"
DEPEND=""
RDEPEND=""
S="${WORKDIR}/mosaik-aligner"
src_prepare() {
sed -i 's/-static//' src/includes/linux.inc || die
}
src_compile() {
emake -C src || die
# emake -C MosaikTools/c++ || die
# emake -C MosaikTools/perl || die
}
src_install() {
dobin bin/* || die
insinto /usr/share/${PN}
doins -r MosaikTools || die
dodoc README Mosaik-1.0-Documentation.pdf
}
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