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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=5
AUTOTOOLS_AUTORECONF=yes
inherit autotools-utils
DESCRIPTION="A DNA sequencing data management framework - C/C++ API"
HOMEPAGE="http://campagnelab.org/software/goby/"
SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-goby_${PV}/goby_${PV}-cpp.zip"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64 ~x86"
IUSE="static-libs"
DEPEND="
>=dev-libs/protobuf-2.4.1
>=dev-libs/libpcre-8.12"
RDEPEND="${DEPEND}"
S="${WORKDIR}/${PV}/cpp"
PATCHES=(
"${FILESDIR}"/${P}-underlinking.patch
)
src_prepare() {
sed \
-e '/BUILD_TIMESTAMP/s:\(goby/timestamp.h\):$(top_srcdir)/src/\1:g' \
-i src/Makefile.am || die
pushd src/goby > /dev/null || die
cp "${FILESDIR}"/*.proto . || die
protoc --cpp_out=. *.proto || die
popd > /dev/null || die
autotools-utils_src_prepare
}
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