blob: 73743cbb4e599ba2782040b526bf1bbb372af3f2 (
plain)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
|
# Copyright 1999-2017 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
EAPI=6
inherit toolchain-funcs
DESCRIPTION="STAR aligner: align RNA-seq reads to reference genome uncompressed suffix arrays"
HOMEPAGE="https://github.com/alexdobin/STAR"
SRC_URI="https://github.com/alexdobin/${PN}/archive/${PV}.tar.gz -> ${P}.tar.gz"
LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~amd64"
RDEPEND="sci-libs/htslib:="
DEPEND="${RDEPEND}
virtual/pkgconfig"
PATCHES=( "${FILESDIR}"/${PN}-2.5.3a-fix-build-system.patch )
DOCS=( README.md CHANGES.md RELEASEnotes.md doc/STARmanual.pdf )
pkg_pretend() {
[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
}
pkg_setup() {
[[ ${MERGE_TYPE} != binary ]] && tc-check-openmp
}
src_configure() {
tc-export CC CXX PKG_CONFIG
}
src_compile() {
emake -C source STAR
}
src_install() {
dobin source/STAR
einstalldocs
}
|
GitWeb
