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# Copyright 1999-2015 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Id$
# @ECLASS: emboss-r1.eclass
# @MAINTAINER:
# sci-biology@gentoo.org
# jlec@gentoo.org
# ted.tanberry@gmail.com
# @AUTHOR:
# Original author: Author Olivier Fisette <ofisette@gmail.com>
# Next gen author: Justin Lecher <jlec@gentoo.org>
# Next gen author: Ted Tanberry <ted.tanberry@gmail.com>
# @BLURB: Use this to easy install EMBOSS and EMBASSY programs (EMBOSS add-ons).
# @DESCRIPTION:
# The inheriting ebuild must set at least EAPI=5 and provide EBO_DESCRIPTION before the inherit line.
# KEYWORDS should be set. Additionally "(R|P)DEPEND"encies and other standard
# ebuild variables can be extended (FOO+=" bar").
#
# Example:
#
# EAPI="5"
#
# EBO_DESCRIPTION="applications from the CBS group"
#
# inherit emboss-r1
# @ECLASS-VARIABLE: EBO_DESCRIPTION
# @DESCRIPTION:
# Should be set. Completes the generic description of the embassy module as follows:
#
# EMBOSS integrated version of ${EBO_DESCRIPTION},
# e.g.
# "EMBOSS integrated version of applications from the CBS group"
#
# Defaults to the upstream name of the module.
# @ECLASS-VARIABLE: EBO_EXTRA_ECONF
# @DEFAULT_UNSET
# @DESCRIPTION:
# Extra config options passed to econf.
case ${EAPI:-0} in
5) ;;
*) die "this eclass doesn't support < EAPI 5" ;;
esac
inherit autotools-utils eutils flag-o-matic
HOMEPAGE="http://emboss.sourceforge.net/"
LICENSE="LGPL-2 GPL-2"
SLOT="0"
IUSE="mysql pdf png postgres static-libs X"
DEPEND="
dev-libs/expat
dev-libs/libpcre:3
sci-libs/plplot
sys-libs/zlib
mysql? ( virtual/mysql )
pdf? ( media-libs/libharu )
png? ( media-libs/gd[png] )
postgres? ( dev-db/postgresql:= )
X? ( x11-libs/libXt )"
RDEPEND="${DEPEND}"
if [[ ${PN} == embassy-* ]]; then
EMBASSY_PACKAGE=yes
# The EMBASSY package name, retrieved from the inheriting ebuild's name
EN=${PN:8}
# The full name and version of the EMBASSY package (excluding the Gentoo
# revision number)
EF=$(echo ${EN} | tr "[:lower:]" "[:upper:]")-${PV}
: ${EBO_DESCRIPTION:=${EN}}
DESCRIPTION="EMBOSS integrated version of ${EBO_DESCRIPTION}"
SRC_URI="ftp://emboss.open-bio.org/pub/EMBOSS/${EF}.tar.gz -> embassy-${EN}-${PVR}.tar.gz"
DEPEND+=" >=sci-biology/emboss-6.6.0[mysql=,pdf=,png=,postgres=,static-libs=,X=]"
S="${WORKDIR}"/${EF}
fi
# @FUNCTION: emboss_src_prepare
# @DESCRIPTION:
# Does the following things
#
# 1. Renames configure.in to configure.ac, if possible
# 2. Applies ${PATCHES[@]} and runs autotools via autotools-utils.eclass
#
emboss-r1_src_prepare() {
if [[ -e configure.in ]]; then
mv configure.{in,ac} || die
fi
autotools-utils_src_prepare
}
# @FUNCTION: emboss_src_configure
# @DESCRIPTION:
# runs econf with following options.
#
# $(use_with X x)
# $(use_with png pngdriver)
# $(use_with pdf hpdf)
# $(use_with mysql mysql)
# $(use_with postgres postgresql)
# $(use_enable static-libs static)
# --enable-large
# --without-java
# --enable-systemlibs
# ${EBO_EXTRA_ECONF}
emboss-r1_src_configure() {
local myeconfargs=(
$(use_with X x)
$(use_with png pngdriver "${EPREFIX}/usr")
$(use_with pdf hpdf "${EPREFIX}/usr")
$(use_with mysql mysql "${EPREFIX}/usr/bin/mysql_config")
$(use_with postgres postgresql "${EPREFIX}/usr/bin/pg_config")
--enable-large
--without-java
--enable-systemlibs
${EBO_EXTRA_ECONF}
)
[[ ${EMBASSY_PACKAGE} == yes ]] && \
append-cppflags "-I${EPREFIX}/usr/include/emboss"
autotools-utils_src_configure
}
EXPORT_FUNCTIONS src_prepare src_configure
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