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-rw-r--r--sci-mathematics/isabelle/isabelle-2013-r2.ebuild353
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diff --git a/sci-mathematics/isabelle/isabelle-2013-r2.ebuild b/sci-mathematics/isabelle/isabelle-2013-r2.ebuild
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index 000000000000..6b5c7f622f8c
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+++ b/sci-mathematics/isabelle/isabelle-2013-r2.ebuild
@@ -0,0 +1,353 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI="5"
+
+inherit eutils java-pkg-2 multilib versionator
+
+MY_PN="Isabelle"
+MY_PV=$(replace_all_version_separators '-')
+MY_P="${MY_PN}${MY_PV}"
+
+JEDIT_PV="20130104"
+JEDIT_PN="jedit_build"
+JEDIT_P="${JEDIT_PN}-${JEDIT_PV}"
+JEDIT_IC_PN="${JEDIT_PN}-isabelle-component"
+JEDIT_IC_P="${JEDIT_IC_PN}-${JEDIT_PV}"
+
+JFREECHART_PV="1.0.14"
+JFREECHART_PN="jfreechart"
+JFREECHART_P="${JFREECHART_PN}-${JFREECHART_PV}"
+JFREECHART_IC_PN="${JFREECHART_PN}-isabelle-component"
+JFREECHART_IC_P="${JFREECHART_IC_PN}-${JFREECHART_PV}"
+
+SS="2.10"
+
+DESCRIPTION="Isabelle is a generic proof assistant"
+HOMEPAGE="http://www.cl.cam.ac.uk/research/hvg/Isabelle/index.html"
+SRC_URI="http://www.cl.cam.ac.uk/research/hvg/Isabelle/dist/${MY_P}.tar.gz
+ http://isabelle.in.tum.de/components/${JEDIT_P}.tar.gz -> ${JEDIT_IC_P}.tar.gz
+ http://isabelle.in.tum.de/components/${JFREECHART_P}.tar.gz -> ${JFREECHART_IC_P}.tar.gz"
+
+LICENSE="BSD"
+SLOT="0/${PV}"
+KEYWORDS="~amd64 ~x86"
+IUSE="doc graphbrowsing ledit readline proofgeneral"
+
+#upstream says
+#bash 2.x/3.x, Poly/ML 5.x, Perl 5.x,
+#for document preparation: complete LaTeX
+DEPEND=">=app-shells/bash-3.0:*
+ dev-java/ant-core:0
+ >=dev-java/jcommon-1.0.18:1.0
+ >=dev-java/jfreechart-1.0.14:1.0
+ >=dev-java/itext-2.1.5:0
+ dev-java/xml-xmlbeans:1
+ >=dev-lang/ghc-7.6.3
+ >=dev-lang/polyml-5.5.0:=[-portable]
+ >=dev-lang/perl-5.8.8-r2
+ dev-lang/swi-prolog
+ virtual/jdk:1.7
+ doc? (
+ virtual/latex-base
+ dev-tex/rail
+ )
+ >=dev-lang/scala-2.10.2:${SS}
+ ledit? (
+ app-misc/ledit
+ )
+ readline? (
+ app-misc/rlwrap
+ )"
+
+RDEPEND="dev-perl/libwww-perl
+ sci-mathematics/sha1-polyml
+ >=virtual/jre-1.7
+ proofgeneral? (
+ >=app-emacs/proofgeneral-4.1
+ )
+ ${DEPEND}"
+
+S="${WORKDIR}"/Isabelle${MY_PV}
+JEDIT_S="${WORKDIR}/${JEDIT_P}"
+JFREECHART_S="${WORKDIR}/${JFREECHART_P}"
+TARGETDIR="/usr/share/Isabelle"${MY_PV}
+LIBDIR="/usr/"$(get_libdir)"/Isabelle"${MY_PV}
+
+LIBRARY_PKGS="scala-${SS},itext,jcommon-1.0,jfreechart-1.0,xml-xmlbeans-1"
+
+src_unpack() {
+ unpack "${MY_P}.tar.gz"
+ pushd "${S}/contrib" || die
+ unpack ${JEDIT_IC_P}.tar.gz
+ unpack ${JFREECHART_IC_P}.tar.gz
+}
+
+pkg_setup() {
+ java-pkg-2_pkg_setup
+}
+
+src_prepare() {
+ java-pkg-2_src_prepare
+ java-pkg_getjars ${LIBRARY_PKGS}
+ epatch "${FILESDIR}/${PN}-2013-gentoo-settings.patch"
+ epatch "${FILESDIR}/${PN}-2013-classpath.patch"
+ polymlver=$(poly -v | cut -d' ' -f2)
+ polymlarch=$(poly -v | cut -d' ' -f9 | cut -d'-' -f1)
+ sed -e "s@5.5.0@${polymlver}@g" \
+ -i "${S}/etc/settings" \
+ || die "Could not configure polyml version in etc/settings"
+ sed -e "s@ML_HOME=\"/@ML_HOME=\"${ROOT}@" \
+ -i "${S}/etc/settings" \
+ || die "Could not configure polyml ML_HOME in etc/settings"
+ sed -e "s@x86_64@${polymlarch}@g" \
+ -i "${S}/etc/settings" \
+ || die "Could not configure polyml arch in etc/settings"
+ sed -e "s@PROOFGENERAL_HOME=\"/@PROOFGENERAL_HOME=\"${ROOT}@" \
+ -i "${S}/etc/settings" \
+ || die "Could not configure PROOFGENERAL_HOME in etc/settings"
+ sed -e "s@/usr/lib64/Isabelle${MY_PV}@${LIBDIR}@g" \
+ -i "${S}/etc/settings" \
+ || die "Could not configure Isabelle lib directory in etc/settings"
+ epatch "${FILESDIR}/${PN}-2012-graphbrowser.patch"
+ epatch "${FILESDIR}/${PN}-2012-libsha1.patch"
+ # this example fails to compile with swi-prolog 6.5.2, so patch it so that
+ # Isabelle will build, then reverse the patch so that the user can see the
+ # original code.
+ epatch "${FILESDIR}/${PN}-2013-HOL-Predicate_Compile_Examples.patch"
+ cat <<- EOF >> "${S}/etc/settings"
+
+ ISABELLE_GHC="${ROOT}usr/bin/ghc"
+ ISABELLE_OCAML="${ROOT}usr/bin/ocaml"
+ ISABELLE_SWIPL="${ROOT}usr/bin/swipl"
+ ISABELLE_JDK_HOME="\$(java-config --jdk-home)"
+ SCALA_HOME="${ROOT}usr/share/scala-${SS}"
+ SHA1_HOME="/usr/$(get_libdir)/sha1-polyml"
+ EOF
+ cat <<- EOF >> "${S}/etc/components"
+ #bundled components
+ contrib/${JEDIT_P}
+ contrib/${JFREECHART_P}
+ EOF
+ if use ledit && ! use readline; then
+ epatch "${FILESDIR}/${PN}-2012-reverse-line-editor-order.patch"
+ fi
+ rm -f "${S}/contrib/jfreechart-1.0.14/lib/iText-2.1.5.jar" \
+ "${S}/contrib/jfreechart-1.0.14/lib/jfreechart-1.0.14.jar" \
+ "${S}/contrib/jfreechart-1.0.14/lib/jcommon-1.0.18.jar" \
+ "${S}/lib/classes/ext/scala-actors.jar" \
+ "${S}/lib/classes/ext/scala-compiler.jar" \
+ "${S}/lib/classes/ext/scala-library.jar" \
+ "${S}/lib/classes/ext/scala-reflect.jar" \
+ "${S}/lib/classes/ext/scala-swing.jar" \
+ || die "Could not rm bundled jar files supplied by Gentoo"
+}
+
+src_compile() {
+ einfo "Building Isabelle. This may take some time."
+ ./bin/isabelle build -a -b -s -v || die "isabelle build failed"
+ epatch --reverse "${FILESDIR}/${PN}-2013-HOL-Predicate_Compile_Examples.patch"
+ if use graphbrowsing
+ then
+ rm -f "${S}/lib/browser/GraphBrowser.jar" \
+ || die "failed cleaning graph browser directory"
+ pushd "${S}/lib/browser" \
+ || die "Could not change directory to lib/browser"
+ ./build || die "failed building the graph browser"
+ popd
+ fi
+ ./bin/isabelle jedit -b -f || die "pide build failed"
+}
+
+src_install() {
+ exeinto ${TARGETDIR}/bin
+ doexe bin/isabelle-process bin/isabelle
+
+ insinto ${TARGETDIR}
+ doins -r src
+ doins -r lib
+ doins -r contrib
+ doins ROOTS
+
+ docompress -x /usr/share/doc/${PF}
+ dodoc -r doc
+ if use doc; then
+ dosym /usr/share/doc/${PF}/doc "${TARGETDIR}/doc"
+ # The build of sci-mathematics/haskabelle with use doc requires
+ # sci-mathematics/isabelle[doc?]. The haskabelle doc build requires
+ # the src/Doc directory stuff in the isabelle package.
+ doins -r src/Doc
+ for i in "./src/Doc/Classes/document/build" \
+ "./src/Doc/Codegen/document/build" \
+ "./src/Doc/Functions/document/build" \
+ "./src/Doc/HOL/document/build" \
+ "./src/Doc/Intro/document/build" \
+ "./src/Doc/IsarImplementation/document/build" \
+ "./src/Doc/IsarRef/document/build" \
+ "./src/Doc/IsarRef/document/showsymbols" \
+ "./src/Doc/LaTeXsugar/document/build" \
+ "./src/Doc/Locales/document/build" \
+ "./src/Doc/Logics/document/build" \
+ "./src/Doc/Main/document/build" \
+ "./src/Doc/Nitpick/document/build" \
+ "./src/Doc/ProgProve/document/build" \
+ "./src/Doc/Ref/document/build" \
+ "./src/Doc/Sledgehammer/document/build" \
+ "./src/Doc/System/document/build" \
+ "./src/Doc/Tutorial/document/build" \
+ "./src/Doc/Tutorial/document/isa-index" \
+ "./src/Doc/ZF/document/build" \
+ "./src/Doc/fixbookmarks" \
+ "./src/Doc/prepare_document" \
+ "./src/Doc/sedindex"
+ do
+ exeinto $(dirname "${TARGETDIR}/${i}")
+ doexe ${i}
+ done
+ fi
+
+ for i in "./Isabelle " \
+ "./bin/isabelle" \
+ "./bin/isabelle-process" \
+ "./lib/Tools/browser" \
+ "./lib/Tools/build" \
+ "./lib/Tools/build_dialog" \
+ "./lib/Tools/components" \
+ "./lib/Tools/dimacs2hol" \
+ "./lib/Tools/display" \
+ "./lib/Tools/doc" \
+ "./lib/Tools/document" \
+ "./lib/Tools/emacs" \
+ "./lib/Tools/env" \
+ "./lib/Tools/findlogics" \
+ "./lib/Tools/getenv" \
+ "./lib/Tools/install" \
+ "./lib/Tools/java" \
+ "./lib/Tools/keywords" \
+ "./lib/Tools/latex" \
+ "./lib/Tools/logo" \
+ "./lib/Tools/make" \
+ "./lib/Tools/mkdir" \
+ "./lib/Tools/mkproject" \
+ "./lib/Tools/mkroot" \
+ "./lib/Tools/options" \
+ "./lib/Tools/print" \
+ "./lib/Tools/scala" \
+ "./lib/Tools/scalac" \
+ "./lib/Tools/tty" \
+ "./lib/Tools/unsymbolize" \
+ "./lib/Tools/usedir" \
+ "./lib/Tools/version" \
+ "./lib/Tools/yxml" \
+ "./lib/browser/build" \
+ "./lib/scripts/feeder" \
+ "./lib/scripts/getsettings" \
+ "./lib/scripts/keywords" \
+ "./lib/scripts/polyml-version" \
+ "./lib/scripts/process" \
+ "./lib/scripts/run-polyml" \
+ "./lib/scripts/run-smlnj" \
+ "./lib/scripts/unsymbolize" \
+ "./lib/scripts/yxml" \
+ "./src/HOL/IMP/export.sh" \
+ "./src/HOL/Library/Sum_of_Squares/neos_csdp_client" \
+ "./src/HOL/Mirabelle/lib/Tools/mirabelle" \
+ "./src/HOL/Mutabelle/lib/Tools/mutabelle" \
+ "./src/HOL/SPARK/Examples/README" \
+ "./src/HOL/TPTP/TPTP_Parser/make_mlyacclib" \
+ "./src/HOL/TPTP/TPTP_Parser/make_tptp_parser" \
+ "./src/HOL/TPTP/lib/Tools/tptp_graph" \
+ "./src/HOL/TPTP/lib/Tools/tptp_isabelle" \
+ "./src/HOL/TPTP/lib/Tools/tptp_isabelle_hot" \
+ "./src/HOL/TPTP/lib/Tools/tptp_nitpick" \
+ "./src/HOL/TPTP/lib/Tools/tptp_refute" \
+ "./src/HOL/TPTP/lib/Tools/tptp_sledgehammer" \
+ "./src/HOL/Tools/ATP/scripts/dummy_atp" \
+ "./src/HOL/Tools/ATP/scripts/remote_atp" \
+ "./src/HOL/Tools/Predicate_Compile/lib/scripts/swipl_version" \
+ "./src/HOL/Tools/SMT/lib/scripts/remote_smt" \
+ "./src/HOL/Tools/Sledgehammer/MaSh/src/compareStats.py" \
+ "./src/HOL/Tools/Sledgehammer/MaSh/src/mash.py" \
+ "./src/Pure/build" \
+ "./src/Pure/build-jars" \
+ "./src/Tools/Code/lib/Tools/codegen" \
+ "./src/Tools/Graphview/lib/Tools/graphview" \
+ "./src/Tools/Metis/fix_metis_license" \
+ "./src/Tools/Metis/make_metis" \
+ "./src/Tools/Metis/scripts/mlpp" \
+ "./src/Tools/WWW_Find/lib/Tools/wwwfind" \
+ "./src/Tools/jEdit/lib/Tools/jedit"
+ do
+ exeinto $(dirname "${TARGETDIR}/${i}")
+ doexe ${i}
+ done
+
+ insinto /etc/isabelle
+ doins -r etc/*
+ dosym /etc/isabelle "${TARGETDIR}/etc"
+
+ dosym "${LIBDIR}/heaps" "${TARGETDIR}/heaps"
+ insinto ${LIBDIR}
+ doins -r heaps
+
+ bin/isabelle install -d ${TARGETDIR} "${ED}usr/bin" \
+ || die "isabelle install failed"
+ newicon lib/icons/isabelle.xpm "${PN}.xpm"
+ dodoc ANNOUNCE CONTRIBUTORS COPYRIGHT NEWS README
+
+ java-pkg_regjar \
+ "${ED}${TARGETDIR}/contrib/jedit_build-20130104/contrib/Highlight.jar" \
+ "${ED}${TARGETDIR}/contrib/jedit_build-20130104/contrib/ErrorList.jar" \
+ "${ED}${TARGETDIR}/contrib/jedit_build-20130104/contrib/Console.jar" \
+ "${ED}${TARGETDIR}/contrib/jedit_build-20130104/contrib/cobra.jar" \
+ "${ED}${TARGETDIR}/contrib/jedit_build-20130104/contrib/js.jar" \
+ "${ED}${TARGETDIR}/contrib/jedit_build-20130104/contrib/jedit-5.0.0-patched/jedit.jar" \
+ "${ED}${TARGETDIR}/contrib/jedit_build-20130104/contrib/jedit-5.0.0-patched/jars/QuickNotepad.jar" \
+ "${ED}${TARGETDIR}/contrib/jfreechart-1.0.14/jfreechart-1.0.14-demo.jar" \
+ "${ED}${TARGETDIR}/lib/classes/ext/Graphview.jar" \
+ "${ED}${TARGETDIR}/lib/classes/ext/Pure.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/Console.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/ErrorList.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/Highlight.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/Isabelle-jEdit.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/QuickNotepad.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/SideKick.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/cobra.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jars/js.jar" \
+ "${ED}${TARGETDIR}/src/Tools/jEdit/dist/jedit.jar"
+}
+
+pkg_postinst() {
+ # If any of the directories in /etc/isabelle/components do not exist, then
+ # even isabelle getenv ISABELLE_HOME fails. Hence it is necessary to
+ # to delete any non-existing directories. If an old Isabelle version was
+ # installed with component ebuilds like sci-mathematics/e, then the
+ # Isabelle version is upgraded, then the contrib directories will not
+ # exist initially, it is necessary to delete them from /etc/isabelle/components.
+ # Then these components are rebuilt (creating these directories) using the
+ # EAPI=5 subslot depends.
+ for i in $(egrep '^[^#].*$' "${ROOT}etc/isabelle/components")
+ do
+ if [ ! -d /usr/share/${MY_P}/${i} ]; then
+ sed -e "\@${i}@d" -i "${ROOT}etc/isabelle/components"
+ fi
+ done
+ if use ledit && use readline; then
+ elog "Both readline and ledit use flags specified. The default setting"
+ elog "if both are installed is to use readline (rlwrap), this can be"
+ elog "modfied by editing the ISABELLE_LINE_EDITOR setting in"
+ elog "${ROOT}/etc/isabelle/settings"
+ fi
+ elog "Please ensure you have a pdf viewer installed, for example:"
+ elog "As root: emerge app-text/zathura-pdf-poppler"
+ elog "Please configure your preferred pdf viewer, something like:"
+ elog "As normal user: xdg-mime default zathura.desktop application/pdf"
+ elog "Or alternatively by editing the PDF_VIEWER variable in the system"
+ elog "settings file ${ROOT}etc/isabelle/settings and/or the user"
+ elog "settings file \$HOME/.isabelle/${MY_P}/etc/settings"
+ elog "To improve sledgehammer performance, consider installing:"
+ elog "USE=isabelle emerge sci-mathematics/e sci-mathematics/spass"
+ elog "For nitpick it is necessary to install:"
+ elog "emerge sci-mathematics/kodkodi"
+}