diff options
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/goby/goby-1.9.7.3.ebuild | 57 | ||||
| -rw-r--r-- | sci-biology/goby/goby-1.9.8.1.ebuild | 57 |
2 files changed, 0 insertions, 114 deletions
diff --git a/sci-biology/goby/goby-1.9.7.3.ebuild b/sci-biology/goby/goby-1.9.7.3.ebuild deleted file mode 100644 index 20622d49ffa7..000000000000 --- a/sci-biology/goby/goby-1.9.7.3.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2011 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=4 - -ESVN_REPO_URI="https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/goby" -EANT_GENTOO_CLASSPATH="commons-logging,commons-lang-2.1,commons-io-1,protobuf,fastutil-5.0,log4j,jsap,commons-configuration,commons-math-2" -EANT_GENTOO_CLASSPATH_EXTRA="lib/icb-utils.jar:lib/edu.mssm.crover.cli.jar:lib/JRI.jar:lib/dsiutils-1.0.12.jar" - -JAVA_ANT_REWRITE_CLASSPATH="true" - -#inherit java-pkg-2 java-ant-2 subversion -inherit java-pkg-2 java-ant-2 - -MY_P="${PN}_${PV}" - -DESCRIPTION="A DNA sequencing data management framework" -HOMEPAGE="http://campagnelab.org/software/goby/" -SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-src.zip - http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-deps.zip" - -LICENSE="GPL-3 LGPL-3" -SLOT="0" -IUSE="+cpp" -KEYWORDS="~amd64 ~x86" - -COMMON_DEPS="dev-java/commons-logging - dev-java/commons-lang:2.1 - dev-java/commons-io:1 - dev-libs/protobuf[java] - dev-java/fastutil:5.0 - dev-java/log4j - dev-java/jsap - dev-java/commons-configuration - dev-java/commons-math:2" -DEPEND=">=virtual/jdk-1.6 - ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.6 - ${COMMON_DEPS} - cpp? ( ~sci-biology/goby-cpp-${PV} )" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - sed -i '/sge/ d' build.xml || die - java-pkg-2_src_prepare -} - -src_install() { - java-pkg_dojar goby*.jar - java-pkg_dolauncher goby --jar goby.jar - - insinto /usr/share/${PN} - doins -r python - dodoc CHANGES.txt -} diff --git a/sci-biology/goby/goby-1.9.8.1.ebuild b/sci-biology/goby/goby-1.9.8.1.ebuild deleted file mode 100644 index 5039b96941b3..000000000000 --- a/sci-biology/goby/goby-1.9.8.1.ebuild +++ /dev/null @@ -1,57 +0,0 @@ -# Copyright 1999-2012 Gentoo Foundation -# Distributed under the terms of the GNU General Public License v2 -# $Id$ - -EAPI=4 - -ESVN_REPO_URI="https://pbtech-vc.med.cornell.edu/public/svn/icb/trunk/goby" -EANT_GENTOO_CLASSPATH="commons-logging,commons-lang-2.1,commons-io-1,protobuf,fastutil-5.0,log4j,jsap,commons-configuration,commons-math-2" -EANT_GENTOO_CLASSPATH_EXTRA="lib/icb-utils.jar:lib/edu.mssm.crover.cli.jar:lib/JRI.jar:lib/dsiutils-1.0.12.jar" - -JAVA_ANT_REWRITE_CLASSPATH="true" - -#inherit java-pkg-2 java-ant-2 subversion -inherit java-pkg-2 java-ant-2 - -MY_P="${PN}_${PV}" - -DESCRIPTION="A DNA sequencing data management framework" -HOMEPAGE="http://campagnelab.org/software/goby/" -SRC_URI="http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-src.zip - http://chagall.med.cornell.edu/goby/releases/archive/release-${MY_P}/${MY_P}-deps.zip" - -LICENSE="GPL-3 LGPL-3" -SLOT="0" -IUSE="+cpp" -KEYWORDS="~amd64 ~x86" - -COMMON_DEPS="dev-java/commons-logging - dev-java/commons-lang:2.1 - dev-java/commons-io:1 - dev-libs/protobuf[java] - dev-java/fastutil:5.0 - dev-java/log4j - dev-java/jsap - dev-java/commons-configuration - dev-java/commons-math:2" -DEPEND=">=virtual/jdk-1.6 - ${COMMON_DEPS}" -RDEPEND=">=virtual/jre-1.6 - ${COMMON_DEPS} - cpp? ( ~sci-biology/goby-cpp-${PV} )" - -S="${WORKDIR}/${MY_P}" - -src_prepare() { - sed -i '/sge/ d' build.xml || die - java-pkg-2_src_prepare -} - -src_install() { - java-pkg_dojar goby*.jar - java-pkg_dolauncher goby --jar goby.jar - - insinto /usr/share/${PN} - doins -r python - dodoc CHANGES.txt -} |