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Diffstat (limited to 'sci-biology/vcftools/vcftools-0.1.12b.ebuild')
-rw-r--r--sci-biology/vcftools/vcftools-0.1.12b.ebuild45
1 files changed, 0 insertions, 45 deletions
diff --git a/sci-biology/vcftools/vcftools-0.1.12b.ebuild b/sci-biology/vcftools/vcftools-0.1.12b.ebuild
deleted file mode 100644
index ddc214c430c0..000000000000
--- a/sci-biology/vcftools/vcftools-0.1.12b.ebuild
+++ /dev/null
@@ -1,45 +0,0 @@
-# Copyright 1999-2015 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PERL_EXPORT_PHASE_FUNCTIONS=no
-inherit perl-module eutils toolchain-funcs
-
-MY_P="${PN}_${PV}"
-
-DESCRIPTION="Tools for working with VCF (Variant Call Format) files"
-HOMEPAGE="http://vcftools.sourceforge.net/"
-SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
-
-LICENSE="LGPL-3"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="lapack"
-
-RDEPEND="lapack? ( virtual/lapack )"
-DEPEND="${RDEPEND}
- virtual/pkgconfig"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
- epatch "${FILESDIR}"/${P}-buildsystem.patch
- tc-export CXX PKG_CONFIG
-}
-
-src_compile() {
- local myconf
- use lapack && myconf="VCFTOOLS_PCA=1"
- emake -C cpp ${myconf}
-}
-
-src_install(){
- perl_set_version
- dobin cpp/${PN}
- insinto ${VENDOR_LIB}
- doins perl/*.pm
- dobin perl/{fill,vcf}-*
- dodoc README.txt
-}