diff options
| -rw-r--r-- | sci-mathematics/pymc/Manifest | 1 | ||||
| -rw-r--r-- | sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch | 11 | ||||
| -rw-r--r-- | sci-mathematics/pymc/pymc-2.3.6.ebuild | 54 |
3 files changed, 66 insertions, 0 deletions
diff --git a/sci-mathematics/pymc/Manifest b/sci-mathematics/pymc/Manifest index 401575ac5a4b..3ff2ed606dca 100644 --- a/sci-mathematics/pymc/Manifest +++ b/sci-mathematics/pymc/Manifest @@ -1 +1,2 @@ DIST pymc-2.2.tar.gz 13137644 SHA256 f618ebb9f075219b1aad5c06156f46fcd5ac543f391de4fa3752f311e9965278 SHA512 1fc44ec68f4a5b773d0705489810774e80c72c52dcfa601cf564737490fbf9e2f12696fb8bf6c706e0d157c3568f68b0b95f9a9846716a88c5a0f5c0ca706a96 WHIRLPOOL ec907b135e5d3bb2cbfb3158afbd8cf054abcdd81c6a11424a214646a471a08dc86e80423f299c5a152b8bd5356653399f5252f6ec06ec0ee87ab44f07a949ca +DIST pymc-2.3.6.zip 402827 SHA256 70b00a9d722d9bba95d975f0a0836e41d8792b8d6fe0dd21b4af209747da3dc5 SHA512 4b5e0663ca296efd8d242a0b6362a12d475cdabf661a430de5455e60999acf8a4a30d053303c2f79e8aec3e5e7d120f56cb341e283aa87f31c224e4e57300d13 WHIRLPOOL 4a0774e0362baef7c6390ec499ba6f605766c614974f04bd9c04e78916b91e0e7f4d35d39e8ba002c654ad15c7158b8b670e6c7010eb1fd8513bfd43e0fe61db diff --git a/sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch b/sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch new file mode 100644 index 000000000000..93ce86f5c717 --- /dev/null +++ b/sci-mathematics/pymc/files/pymc-2.3.6-remove-hardcoded-blas.patch @@ -0,0 +1,11 @@ +--- a/setup.py ++++ b/setup.py +@@ -80,7 +80,7 @@ + + # Compile covariance functions + config.add_extension(name='gp.cov_funs.isotropic_cov_funs',\ +-sources=['pymc/gp/cov_funs/isotropic_cov_funs.f','blas/BLAS/dscal.f'],\ ++sources=['pymc/gp/cov_funs/isotropic_cov_funs.f'],\ + extra_info=lapack_info) + + config.add_extension(name='gp.cov_funs.distances',sources=['pymc/gp/cov_funs/distances.f'], extra_info=lapack_info) diff --git a/sci-mathematics/pymc/pymc-2.3.6.ebuild b/sci-mathematics/pymc/pymc-2.3.6.ebuild new file mode 100644 index 000000000000..3d5e8199ddb4 --- /dev/null +++ b/sci-mathematics/pymc/pymc-2.3.6.ebuild @@ -0,0 +1,54 @@ +# Copyright 1999-2016 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Id$ + +EAPI=6 + +PYTHON_COMPAT=( python{2_7,3_4,3_5} ) + +inherit distutils-r1 flag-o-matic fortran-2 toolchain-funcs + +DESCRIPTION="Markov Chain Monte Carlo sampling toolkit" +HOMEPAGE="https://github.com/${PN}-devs/${PN} https://pypi.python.org/pypi/${PN}" +SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.zip" + +SLOT=0 +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +LICENSE=AFL-3.0 +IUSE="test" + +RDEPEND=">=dev-python/numpy-1.6[${PYTHON_USEDEP},lapack] + >=dev-python/matplotlib-1.0[${PYTHON_USEDEP}]" +DEPEND=" + test? ( + ${RDEPEND} + dev-python/nose[${PYTHON_USEDEP}] + )" + +PATCHES=( "${FILESDIR}/${PN}-2.3.6-remove-hardcoded-blas.patch" ) + +# tests freeze at some point +#RESTRICT="test" + +python_prepare_all() { + # forcibly remove bundled libs, just to be sure... + rm -r blas || die + + distutils-r1_python_prepare_all +} + +python_configure_all() { + append-fflags -fPIC + append-ldflags -shared + + [[ $(tc-getFC) == *gfortran* ]] && mydistutilsargs=( config_fc --fcompiler=gnu95 ) +} + +python_test() { + distutils_install_for_testing + cd "${TEST_DIR}" || die + # Use agg backend instead of gtk + echo 'backend : agg' > matplotlibrc || die + + ${EPYTHON} -c "import pymc; pymc.test()" || die "Tests failed on ${EPYTHON}" +} |