sci-physics/root: bump to 5.34.36.

  Support c++11.

  replace sed with hprefixify.

  Also bump root-docs.

Package-Manager: portage-2.3.0

2 files changed, 442 insertions, 0 deletions

diff --git a/sci-physics/root/Manifest b/sci-physics/root/Manifest
index cc37278b5c35..f8d3d4908fe1 100644
--- a/sci-physics/root/Manifest
+++ b/sci-physics/root/Manifest
@@ -1,3 +1,4 @@
 DIST root_v5.34.26.source.tar.gz 75171961 SHA256 c1fd2a249bb7210914b42e35dba4f1262cfa46b79ef7a41f73d7f08f8c54a643 SHA512 f5da5e20d1763608a32d78c48581e574a3f51aef47ecf6987a4064d1fb3234dfc9f626e041a17213f881f52f807ed6a6da60bf1d24951fa7dc2cadd94f8dd8b4 WHIRLPOOL 77b48b815c971642da68b71732a0ea3372648634281be634037b13cb58488f7075ec8bfc9a684e55d85cd9b038f229be29b19a15dfc829f0ce63a5f17241c23c
 DIST root_v5.34.32.source.tar.gz 75170203 SHA256 939c7592802a54b6cbc593efb6e51699bf52e92baf6d6b20f486aaa08480fc5f SHA512 6485f2bb544947173e1feb2cfb41d6a176020027f1193d9388700a797ba4badbf497022e6129fdc4879e709460bf1efabf3e51c51840f0c781fa12e631419afc WHIRLPOOL 695147a519415b99e73fdad1cd61bb1944e292628236b5a7cbf1835174c950fa9cb068431a8164f24663323163012ea652db84d082f9f1eb1fcae79489575d9e
+DIST root_v5.34.36.source.tar.gz 75427331 SHA256 fc868e5f4905544c3f392cc9e895ef5571a08e48682e7fe173bd44c0ba0c7dcd SHA512 2cc0c8f8b63b2a3ce01c49c41704483548a7324d92c21a63e3e36a00f4d6f5656a7844fdf48cb71a6f2a2c974112527300ffd3bb5502d8365ffaf138e6ae4c7a WHIRLPOOL 137c054874645913372edca3e02087c0c4f2a3c4d662b488eedaec517f75a8ab956ade418e2942aee925e58da804b325bbd6756be653bd767cc1c82cb7a650c9
 DIST root_v6.04.06.source.tar.gz 99180724 SHA256 6deac9cd71fe2d7a48ea2bcbd793639222c4743275dbc946c158295b1e1fe330 SHA512 ac96ac998ed4894587b7d286d79bcbea7b33f15764cc2513ae089e86c584e2dcb064cd135d44a4bfd2bede368eb772ccbffcd6bf426857a1236f5d7e9f5ce6fd WHIRLPOOL 7ffca036917d798ade31e1a22e9518d567e4267af5d1db555ea0e82c1bc2c7a1f665c8cd76d3ce6511507ab7befea4881580259c6142f1e668edafbcbc5e496e
diff --git a/sci-physics/root/root-5.34.36.ebuild b/sci-physics/root/root-5.34.36.ebuild
new file mode 100644
index 000000000000..cb13f8fabf60
--- /dev/null
+++ b/sci-physics/root/root-5.34.36.ebuild
@@ -0,0 +1,441 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+if [[ ${PV} == "9999" ]] ; then
+	inherit git-r3
+	EGIT_REPO_URI="http://root.cern.ch/git/root.git"
+else
+	SRC_URI="https://root.cern.ch/download/${PN}_v${PV}.source.tar.gz"
+	KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+fi
+
+PYTHON_COMPAT=( python2_7 )
+
+inherit elisp-common eutils fdo-mime fortran-2 multilib python-single-r1 \
+	toolchain-funcs user versionator prefix
+
+DESCRIPTION="C++ data analysis framework and interpreter from CERN"
+HOMEPAGE="https://root.cern.ch"
+
+SLOT="0/$(get_version_component_range 1-3 ${PV})"
+LICENSE="LGPL-2.1 freedist MSttfEULA LGPL-3 libpng UoI-NCSA"
+IUSE="+X afs avahi c++11 c++14 doc emacs examples fits fftw gdml
+	graphviz http kerberos ldap +math +memstat mpi mysql odbc
+	+opengl openmp oracle postgres prefix pythia6 pythia8
+	python qt4 +reflex ruby shadow sqlite ssl table +tiff xinetd xml xrootd"
+
+# TODO: add support for: davix
+# TODO: unbundle: vdt
+
+REQUIRED_USE="
+	!X? ( !opengl !qt4 !tiff )
+	mpi? ( math !openmp )
+	openmp? ( math !mpi )
+	python? ( ${PYTHON_REQUIRED_USE} )
+"
+
+CDEPEND="
+	app-arch/xz-utils:0=
+	>=dev-lang/cfortran-4.4-r2
+	dev-libs/libpcre:3=
+	media-fonts/dejavu
+	media-libs/freetype:2=
+	media-libs/libpng:0=
+	sys-libs/zlib:0=
+	X? (
+		media-libs/ftgl:0=
+		media-libs/glew:0=
+		x11-libs/libX11:0=
+		x11-libs/libXext:0=
+		x11-libs/libXpm:0=
+		|| (
+			media-libs/libafterimage[gif,jpeg,png,tiff?]
+			>=x11-wm/afterstep-2.2.11[gif,jpeg,png,tiff?]
+		)
+		opengl? ( virtual/opengl virtual/glu x11-libs/gl2ps:0= )
+		qt4? (
+			dev-qt/qtgui:4=
+			dev-qt/qtopengl:4=
+			dev-qt/qt3support:4=
+			dev-qt/qtsvg:4=
+			dev-qt/qtwebkit:4=
+			dev-qt/qtxmlpatterns:4=
+		)
+		x11-libs/libXft:0=
+	)
+	afs? ( net-fs/openafs )
+	avahi? ( net-dns/avahi:0= )
+	emacs? ( virtual/emacs )
+	fits? ( sci-libs/cfitsio:0= )
+	fftw? ( sci-libs/fftw:3.0= )
+	graphviz? ( media-gfx/graphviz:0= )
+	http? ( dev-libs/fcgi:0= )
+	kerberos? ( virtual/krb5 )
+	ldap? ( net-nds/openldap:0= )
+	math? (
+		sci-libs/gsl:0=
+		sci-mathematics/unuran:0=
+		mpi? ( virtual/mpi )
+	)
+	mysql? ( virtual/mysql )
+	odbc? ( || ( dev-db/libiodbc dev-db/unixODBC ) )
+	oracle? ( dev-db/oracle-instantclient-basic:0= )
+	postgres? ( dev-db/postgresql:= )
+	pythia6? ( sci-physics/pythia:6= )
+	pythia8? ( >=sci-physics/pythia-8.1.80:8= <sci-physics/pythia-8.2.0:8= )
+	python? ( ${PYTHON_DEPS} )
+	ruby? (
+		dev-lang/ruby:=
+		dev-ruby/rubygems:=
+	)
+	shadow? ( virtual/shadow )
+	sqlite? ( dev-db/sqlite:3= )
+	ssl? ( dev-libs/openssl:0= )
+	xml? ( dev-libs/libxml2:2= )
+	xrootd? ( >=net-libs/xrootd-3.3.5:0= )
+"
+
+DEPEND="${CDEPEND}
+	virtual/pkgconfig"
+
+RDEPEND="${CDEPEND}
+	reflex? ( dev-cpp/gccxml )
+	xinetd? ( sys-apps/xinetd )"
+
+PDEPEND="doc? ( ~app-doc/root-docs-${PV}[http=,math=] )"
+
+S="${WORKDIR}/${PN}"
+
+# install stuff in ${P} and not ${PF} for easier tracking in root-docs
+DOC_DIR="/usr/share/doc/${P}"
+
+die_compiler() {
+	eerror "You are using a $(tc-getCXX)-$5 without C++$1 capabilities"
+	die "Need one of the following C++$1 capable compilers:\n"\
+		"    >=sys-devel/gcc[cxx]-$2\n"\
+		"    >=sys-devel/clang-$3\n"\
+		"    >=dev-lang/icc-$4"
+}
+
+# check compiler to satisfy minimal versions
+# $1 - std version
+# $2 - g++
+# $3 - clang++
+# $4 - icc/icpc
+check_compiler() {
+	local cur ver
+	case "$(tc-getCXX)" in
+		*clang++*)
+			ver="$(best_version sys-devel/clang | sed 's:sys-devel/clang-::')"
+			cur="$3"
+		;;
+		*g++*)
+			ver="$(gcc-version)"
+			cur="$2"
+		;;
+		*icc*|*icpc*)
+			ver="$(best_version dev-lang/icc | sed 's:dev-lang/icc-::')"
+			cur="$4"
+		;;
+		*)
+			ewarn "You are using an unsupported compiler."
+			ewarn "Please report any issues upstream."
+			return 0
+		;;
+	esac
+	version_is_at_least "${cur}" "${ver}" || die_compiler "$1" "$2" "$3" "$4" "${ver}"
+}
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	use python && python-single-r1_pkg_setup
+	echo
+	elog "There are extra options on packages not yet in Gentoo:"
+	elog "Afdsmgrd, AliEn, castor, Chirp, dCache, gfal, Globus, gLite,"
+	elog "HDFS, Monalisa, MaxDB/SapDB, SRP."
+	elog "You can use the env variable EXTRA_ECONF variable for this."
+	elog "For example, for SRP, you would set: "
+	elog "EXTRA_ECONF=\"--enable-srp --with-srp-libdir=${EROOT%/}/usr/$(get_libdir)\""
+	echo
+
+	enewgroup rootd
+	enewuser rootd -1 -1 /var/spool/rootd rootd
+
+	if use math; then
+		if use openmp; then
+			if [[ "$(tc-getCXX)" == *g++* && "$(tc-getCXX)" != *clang++* ]] && ! tc-has-openmp; then
+				ewarn "You are using a g++ without OpenMP capabilities"
+				die "Need an OpenMP capable compiler"
+			else
+				export USE_OPENMP=1 USE_PARALLEL_MINUIT2=1
+			fi
+		elif use mpi; then
+			export USE_MPI=1 USE_PARALLEL_MINUIT2=1
+		fi
+	fi
+
+	use c++11 && check_compiler "11" "4.8" "3.3" "13"
+	use c++14 && check_compiler "14" "4.9" "3.4" "15"
+}
+
+src_prepare() {
+	epatch \
+		"${FILESDIR}"/${PN}-5.28.00b-glibc212.patch \
+		"${FILESDIR}"/${PN}-5.32.00-cfitsio.patch \
+		"${FILESDIR}"/${PN}-5.32.00-chklib64.patch \
+		"${FILESDIR}"/${PN}-5.32.00-dotfont.patch \
+		"${FILESDIR}"/${PN}-5.34.05-nobyte-compile.patch \
+		"${FILESDIR}"/${PN}-5.34.13-unuran.patch \
+		"${FILESDIR}"/${PN}-5.34.26-ldflags.patch
+
+	# make sure we use system libs and headers
+	rm montecarlo/eg/inc/cfortran.h README/cfortran.doc || die
+	rm -r graf2d/asimage/src/libAfterImage || die
+	rm -r graf3d/ftgl/{inc,src} || die
+	rm -r graf2d/freetype/src || die
+	rm -r graf3d/glew/{inc,src} || die
+	rm -r core/pcre/src || die
+	rm -r math/unuran/src/unuran-*.tar.gz || die
+	LANG=C LC_ALL=C find core/zip -type f -name "[a-z]*" -print0 | \
+		xargs -0 rm || die
+	rm -r core/lzma/src/*.tar.gz || die
+	rm graf3d/gl/{inc,src}/gl2ps.* || die
+	sed -i -e 's/^GLLIBS *:= .* $(OPENGLLIB)/& -lgl2ps/' \
+		graf3d/gl/Module.mk || die
+
+	# In Gentoo, libPythia6 is called libpythia6
+	# iodbc is in /usr/include/iodbc
+	# pg_config.h is checked instead of libpq-fe.h
+	sed -i \
+		-e 's:libPythia6:libpythia6:g' \
+		-e 's:$ODBCINCDIR:$ODBCINCDIR /usr/include/iodbc:' \
+		-e 's:libpq-fe.h:pg_config.h:' \
+		configure || die "adjusting configure for Gentoo failed"
+
+	hprefixify configure
+	hprefixify -e "s,I/usr/include,I${EPREFIX}/usr/include," config/Makefile.in
+
+	# CSS should use local images
+	sed -i -e 's,http://.*/,,' etc/html/ROOT.css || die "html sed failed"
+
+	# fix reflex path (bug #497280)
+	sed -i -e 's|${ROOTSYS}/lib|@libdir@|' config/genreflex.in || die
+
+	# QTDIR only used for qt3 in gentoo, and configure looks for it.
+	unset QTDIR
+}
+
+src_configure() {
+	local -a myconf
+	# Some compilers need special care
+	case "$(tc-getCXX)" in
+		*clang++*)
+			myconf=(
+				--with-clang
+				--with-f77="$(tc-getFC)"
+			)
+		;;
+		*icc*|*icpc*)
+			# For icc we need to provide architecture manually
+			# and not to tamper with tc-get*
+			use x86 && myconf=( linuxicc )
+			use amd64 && myconf=( linuxx8664icc )
+		;;
+		*)	# gcc goes here too
+			myconf=(
+				--with-cc="$(tc-getCC)"
+				--with-cxx="$(tc-getCXX)"
+				--with-f77="$(tc-getFC)"
+				--with-ld="$(tc-getCXX)"
+			)
+		;;
+	esac
+
+	# the configure script is not the standard autotools
+	myconf+=(
+		--prefix="${EPREFIX}/usr"
+		--etcdir="${EPREFIX}/etc/root"
+		--libdir="${EPREFIX}/usr/$(get_libdir)/${PN}"
+		--docdir="${EPREFIX}${DOC_DIR}"
+		--tutdir="${EPREFIX}${DOC_DIR}/examples/tutorials"
+		--testdir="${EPREFIX}${DOC_DIR}/examples/tests"
+		--cflags='${CFLAGS}'
+		--cxxflags='${CXXFLAGS}'
+		--disable-builtin-afterimage
+		--disable-builtin-ftgl
+		--disable-builtin-freetype
+		--disable-builtin-glew
+		--disable-builtin-lzma
+		--disable-builtin-pcre
+		--disable-builtin-zlib
+		--disable-cling
+		--disable-werror
+		--enable-explicitlink
+		--enable-shared
+		--enable-soversion
+		--fail-on-missing
+		--nohowto
+		--with-afs-shared=yes
+		--with-sys-iconpath="${EPREFIX}/usr/share/pixmaps"
+		$(use_enable X x11)
+		$(use_enable X asimage)
+		$(use_enable X xft)
+		$(use_enable afs)
+		$(use_enable avahi bonjour)
+		$(use_enable c++11 cxx11)
+		$(use_enable c++14 cxx14)
+		$(use_enable fits fitsio)
+		$(use_enable fftw fftw3)
+		$(use_enable gdml)
+		$(use_enable graphviz gviz)
+		$(use_enable http)
+		$(use_enable kerberos krb5)
+		$(use_enable ldap)
+		$(use_enable math genvector)
+		$(use_enable math gsl-shared)
+		$(use_enable math mathmore)
+		$(use_enable math minuit2)
+		$(use_enable math roofit)
+		$(use_enable math tmva)
+		$(use_enable math vc)
+		$(use_enable math vdt)
+		$(use_enable math unuran)
+		$(use_enable memstat)
+		$(use_enable mysql)
+		$(usex mysql "--with-mysql-incdir=${EPREFIX}/usr/include/mysql" "")
+		$(use_enable odbc)
+		$(use_enable opengl)
+		$(use_enable oracle)
+		$(use_enable postgres pgsql)
+		$(use_enable prefix rpath)
+		$(use_enable pythia6)
+		$(use_enable pythia8)
+		$(use_enable python)
+		$(use_enable qt4 qt)
+		$(use_enable qt4 qtgsi)
+		$(use_enable reflex cintex)
+		$(use_enable reflex)
+		$(use_enable ruby)
+		$(use_enable shadow shadowpw)
+		$(use_enable sqlite)
+		$(use_enable ssl)
+		$(use_enable table)
+		$(use_enable tiff astiff)
+		$(use_enable xml)
+		$(use_enable xrootd)
+		${EXTRA_ECONF}
+	)
+
+	# usex can't be used here, because pg_config may be not
+	# installed with USE="-postgres"
+	use postgres && myconf+=( --with-pgsql-incdir=$(pg_config --includedir) )
+
+	./configure ${myconf[@]} || die "configure failed"
+}
+
+src_compile() {
+	# The build system does not handle the dependency of bin/rmkdepend correctly,
+	# preventing it to be called in parallel.  Build bin/rmkdepend explicitly
+	# first to circumvent the problem.
+	emake bin/rmkdepend
+	emake \
+		OPT="${CXXFLAGS}" \
+		F77OPT="${FFLAGS}" \
+		ROOTSYS="${S}" \
+		LD_LIBRARY_PATH="${S}/lib"
+	use emacs && elisp-compile build/misc/*.el
+}
+
+daemon_install() {
+	local daemons="rootd proofd"
+	dodir /var/spool/rootd
+	fowners rootd:rootd /var/spool/rootd
+	dodir /var/spool/rootd/{pub,tmp}
+	fperms 1777 /var/spool/rootd/{pub,tmp}
+
+	local i
+	for i in ${daemons}; do
+		newinitd "${FILESDIR}"/${i}.initd ${i}
+		newconfd "${FILESDIR}"/${i}.confd ${i}
+	done
+	if use xinetd; then
+		insinto /etc/xinetd
+		doins "${S}"/etc/daemons/{rootd,proofd}.xinetd
+	fi
+}
+
+desktop_install() {
+	cd "${S}"
+	echo "Icon=root-system-bin" >> etc/root.desktop
+	domenu etc/root.desktop
+	doicon build/package/debian/root-system-bin.png
+
+	insinto /usr/share/icons/hicolor/48x48/mimetypes
+	doins build/package/debian/application-x-root.png
+
+	insinto /usr/share/icons/hicolor/48x48/apps
+	doicon build/package/debian/root-system-bin.xpm
+}
+
+cleanup_install() {
+	# Cleanup of files either already distributed or unused on Gentoo
+	pushd "${ED}" > /dev/null
+	rm usr/share/root/fonts/LICENSE || die
+	rm etc/root/proof/*.sample || die
+	rm -r etc/root/daemons || die
+	# these should be in PATH
+	mv etc/root/proof/utils/pq2/pq2* usr/bin/ || die
+	rm ${DOC_DIR#/}/{INSTALL,LICENSE,COPYING.CINT} || die
+	use examples || rm -r ${DOC_DIR#/}/examples || die
+	cd usr/$(get_libdir)/root/cint/cint
+	rm lib/posix/mktypes lib/dll_stl/setup lib/G__* || die
+	rm lib/dll_stl/G__* lib/dll_stl/rootcint_* lib/posix/exten.o || die
+	rm include/makehpib || die
+	popd > /dev/null
+}
+
+src_install() {
+	emake DESTDIR="${D}" install
+
+	echo "LDPATH=${EPREFIX%/}/usr/$(get_libdir)/root" > 99root
+
+	use pythia8 && echo "PYTHIA8=${EPREFIX%/}/usr" >> 99root
+	if use python; then
+		echo "PYTHONPATH=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root
+		python_optimize "${D}/usr/$(get_libdir)/root"
+		use reflex && python_optimize "${D}/usr/$(get_libdir)/root/python/genreflex/"
+	fi
+	use ruby && \
+		echo "RUBYLIB=${EPREFIX%/}/usr/$(get_libdir)/root" >> 99root
+	use emacs && elisp-install ${PN} build/misc/*.{el,elc}
+	if use examples; then
+		# these should really be taken care of by the root make install
+		insinto ${DOC_DIR}/examples/tutorials/tmva
+		doins -r tmva/test
+	fi
+	doenvd 99root
+
+	# The build system installs Emacs support unconditionally in the wrong
+	# directory. Remove it and call elisp-install in case of USE=emacs.
+	rm -r "${ED}"/usr/share/emacs || die
+
+	daemon_install
+	desktop_install
+	cleanup_install
+
+	# do not copress files used by ROOT's CLI (.credit, .demo, .license)
+	docompress -x "${DOC_DIR}"/{CREDITS,examples/tutorials}
+	# needed for .license command to work
+	dosym "${ED}"usr/portage/licenses/LGPL-2.1 "${DOC_DIR}/LICENSE"
+}
+
+pkg_postinst() {
+	fdo-mime_desktop_database_update
+}
+
+pkg_postrm() {
+	fdo-mime_desktop_database_update
+}