proj/gentoo: Initial commit

This commit represents a new era for Gentoo:
Storing the gentoo-x86 tree in Git, as converted from CVS.

This commit is the start of the NEW history.
Any historical data is intended to be grafted onto this point.

Creation process:
1. Take final CVS checkout snapshot
2. Remove ALL ChangeLog* files
3. Transform all Manifests to thin
4. Remove empty Manifests
5. Convert all stale $Header$/$Id$ CVS keywords to non-expanded Git $Id$
5.1. Do not touch files with -kb/-ko keyword flags.

Signed-off-by: Robin H. Johnson <robbat2@gentoo.org>
X-Thanks: Alec Warner <antarus@gentoo.org> - did the GSoC 2006 migration tests
X-Thanks: Robin H. Johnson <robbat2@gentoo.org> - infra guy, herding this project
X-Thanks: Nguyen Thai Ngoc Duy <pclouds@gentoo.org> - Former Gentoo developer, wrote Git features for the migration
X-Thanks: Brian Harring <ferringb@gentoo.org> - wrote much python to improve cvs2svn
X-Thanks: Rich Freeman <rich0@gentoo.org> - validation scripts
X-Thanks: Patrick Lauer <patrick@gentoo.org> - Gentoo dev, running new 2014 work in migration
X-Thanks: Michał Górny <mgorny@gentoo.org> - scripts, QA, nagging
X-Thanks: All of other Gentoo developers - many ideas and lots of paint on the bikeshed

6 files changed, 287 insertions, 0 deletions

diff --git a/sci-physics/fastjet/Manifest b/sci-physics/fastjet/Manifest
new file mode 100644
index 000000000000..86da395fe0ae
--- /dev/null
+++ b/sci-physics/fastjet/Manifest
@@ -0,0 +1,2 @@
+DIST fastjet-3.0.3.tar.gz 2240610 SHA256 6a3e5869cf43b325c7222a925e195b2bd624db922958a926cb4211c00882a50d SHA512 1fcdd0998d222ae089f10676ae1048fdce3e90f6aef3cd51463719b7ab26f8bcdd599d9521c6f9ef18e3989dbffd7f06da717ce845ab7e486a99433129b56f41 WHIRLPOOL b43091b978bde5189ed009ad424934d45607717bfc81e4d0b49c1ce634650bbf9e51019c7bfb0f6ce6298a697e6c8be296feaae1ac31bd2184e44b53a538ba48
+DIST fastjet-3.0.6.tar.gz 2216501 SHA256 9718f1d014afe4433bc0612a67a050d720c486fcfa7ad9c9b96bf087b0f3da0b SHA512 1f01b7ed0e07bd94c88faa123f72c2e3bcd81ad32ab4d03dc0a18dd18635f3b18ba8d339176b0ef1d6e58cecd9f37aaea30b4ad909d2782ce5be7c11e205c3a5 WHIRLPOOL 8c1aeab2724940e41ca6eed093582d6d9a5424b7f2b86af00bd7e1fedd3df0157538c6d97ff08147a4e3a5300d035d683df31b4a7a9d36bc9c14eca9375ae1e1
diff --git a/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild
new file mode 100644
index 000000000000..230e4ab48bcb
--- /dev/null
+++ b/sci-physics/fastjet/fastjet-3.0.3-r1.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+AUTOTOOLS_AUTORECONF=yes
+
+FORTRAN_NEEDED=plugins
+
+inherit autotools-utils fortran-2 flag-o-matic
+
+DESCRIPTION="Fast implementation of several recombination jet algorithms"
+HOMEPAGE="http://www.fastjet.fr/"
+SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz"
+
+LICENSE="GPL-2 QPL"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cgal doc examples +plugins static-libs"
+
+RDEPEND="cgal? ( sci-mathematics/cgal )"
+DEPEND="${RDEPEND}
+	doc? ( app-doc/doxygen[dot] )
+	plugins? ( sci-physics/siscone )"
+
+PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch )
+
+src_configure() {
+	use cgal && has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp
+	local myeconfargs=(
+		$(use_enable cgal)
+		$(use_enable plugins allplugins)
+		$(use_enable plugins allcxxplugins)
+	)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	autotools-utils_src_compile
+	if use doc; then
+		doxygen Doxyfile || die
+	fi
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dohtml -r html/*
+	if use examples; then
+		insinto /usr/share/doc/${PF}
+		find example \
+			-name Makefile -or Makefile.in -or Makefile.am -delete
+		doins -r example/*
+	fi
+}
diff --git a/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild
new file mode 100644
index 000000000000..1aa627e9fddb
--- /dev/null
+++ b/sci-physics/fastjet/fastjet-3.0.6-r1.ebuild
@@ -0,0 +1,55 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=5
+
+FORTRAN_NEEDED=plugins
+AUTOTOOLS_AUTORECONF=1
+
+inherit autotools-utils fortran-2 flag-o-matic
+
+DESCRIPTION="Fast implementation of several recombination jet algorithms"
+HOMEPAGE="http://www.fastjet.fr/"
+SRC_URI="${HOMEPAGE}/repo/${P}.tar.gz"
+
+LICENSE="GPL-2 QPL"
+SLOT="0"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="cgal doc examples +plugins static-libs"
+
+RDEPEND="cgal? ( sci-mathematics/cgal )"
+DEPEND="${RDEPEND}
+	doc? ( app-doc/doxygen[dot] )
+	plugins? ( sci-physics/siscone:0= )"
+
+PATCHES=( "${FILESDIR}"/${P}-system-siscone.patch )
+
+src_configure() {
+	use cgal && \
+		has_version sci-mathematics/cgal[gmp] && append-ldflags -lgmp
+	local myeconfargs=(
+		$(use_enable cgal)
+		$(use_enable plugins allplugins)
+		$(use_enable plugins allcxxplugins)
+	)
+	autotools-utils_src_configure
+}
+
+src_compile() {
+	autotools-utils_src_compile
+	if use doc; then
+		doxygen Doxyfile || die
+	fi
+}
+
+src_install() {
+	autotools-utils_src_install
+	use doc && dohtml -r html/*
+	if use examples; then
+		insinto /usr/share/doc/${PF}
+		find example \
+			-name Makefile -or Makefile.in -or Makefile.am -delete
+		doins -r example/*
+	fi
+}
diff --git a/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch
new file mode 100644
index 000000000000..b74b8e4e9033
--- /dev/null
+++ b/sci-physics/fastjet/files/fastjet-3.0.3-system-siscone.patch
@@ -0,0 +1,83 @@
+diff -Nur fastjet-3.0.3.orig/configure.ac fastjet-3.0.3/configure.ac
+--- fastjet-3.0.3.orig/configure.ac	2012-06-25 15:15:32.000000000 +0100
++++ fastjet-3.0.3/configure.ac	2012-07-24 18:39:11.000000000 +0100
+@@ -14,7 +14,7 @@
+ dnl  - the first macro needs to place the files in the correct 
+ dnl    dir in order to have the correct -I options for the remote build
+ dnl  - see Makefile.am for distcleaning AX_PREFIX_CONFIG_H leftovers
+-AM_CONFIG_HEADER(include/fastjet/config_raw.h:config.h.in)
++AC_CONFIG_HEADERS(include/fastjet/config_raw.h:config.h.in)
+ AX_PREFIX_CONFIG_H(include/fastjet/config_auto.h,FASTJET,include/fastjet/config_raw.h)
+ 
+ dnl check autoconf version
+@@ -252,6 +252,12 @@
+ fi
+ 
+ dnl SISCone
++AC_ARG_WITH(bundle-siscone,
++	[  --with-bundle-siscone  Build the bundled SISCone library [default=no]],
++	[bundle_siscone=$withval],
++	[bundle_siscone=no])
++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno)
++
+ ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes,
+ 	         [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone"
+                   CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"])
+diff -Nur fastjet-3.0.3.orig/example/Makefile.am fastjet-3.0.3/example/Makefile.am
+--- fastjet-3.0.3.orig/example/Makefile.am	2012-06-13 15:14:58.000000000 +0100
++++ fastjet-3.0.3/example/Makefile.am	2012-07-24 18:26:15.000000000 +0100
+@@ -43,7 +43,7 @@
+ 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include
+ 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ else
+ EXTRA_DIST += 03-plugin.cc
+ endif
+@@ -125,7 +125,7 @@
+ fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ if BUILD_PLUGIN_SISCONE
+ fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ 
+ fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc
+@@ -135,7 +135,7 @@
+ fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la 
+ if BUILD_PLUGIN_SISCONE
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ if BUILD_PLUGIN_CDFCONES
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones
+diff -Nur fastjet-3.0.3.orig/plugins/SISCone/Makefile.am fastjet-3.0.3/plugins/SISCone/Makefile.am
+--- fastjet-3.0.3.orig/plugins/SISCone/Makefile.am	2012-06-13 15:14:51.000000000 +0100
++++ fastjet-3.0.3/plugins/SISCone/Makefile.am	2012-07-24 18:36:56.000000000 +0100
+@@ -1,11 +1,22 @@
+-SUBDIRS = siscone fastjet .
++SUBDIRS = fastjet .
+ 
+ if MONOLITHIC_PLUGINS
+ noinst_LTLIBRARIES = libSISConePlugin.la
+ else
+ lib_LTLIBRARIES = libSISConePlugin.la
+ endif
+-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include
++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include
++
++if BUNDLE_SISCONE
++SUBDIRS += siscone
++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone
++libSISConePlugin_la_LIBADD = \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++else
++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical
++endif
++
+ libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc
+ 
+ EXTRA_DIST = makefile.static
diff --git a/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch
new file mode 100644
index 000000000000..d3995473fe54
--- /dev/null
+++ b/sci-physics/fastjet/files/fastjet-3.0.6-system-siscone.patch
@@ -0,0 +1,74 @@
+diff -Nur fastjet-3.0.6.orig/configure.ac fastjet-3.0.6/configure.ac
+--- fastjet-3.0.6.orig/configure.ac	2014-05-06 10:29:55.240632504 -0700
++++ fastjet-3.0.6/configure.ac	2014-05-06 10:36:20.156246416 -0700
+@@ -261,6 +261,12 @@
+ fi
+ 
+ dnl SISCone
++AC_ARG_WITH(bundle-siscone,
++	[  --with-bundle-siscone  Build the bundled SISCone library [default=no]],
++	[bundle_siscone=$withval],
++	[bundle_siscone=no])
++AM_CONDITIONAL(BUNDLE_SISCONE, test x$bundle_siscone != xno)
++
+ ACX_CHECK_PLUGIN(SISCone, siscone, SISCONE, yes,
+ 	         [CONFIG_LIBS_PLUGINS=${CONFIG_LIBS_PLUGINS}" -lsiscone_spherical -lsiscone"
+                   CONFIG_LIBS_PLUGINS_STATIC=${CONFIG_LIBS_PLUGINS_STATIC}" \${installationdir}/lib/libsiscone.a \${installationdir}/lib/libsiscone_spherical.a"])
+diff -Nur fastjet-3.0.6.orig/example/Makefile.am fastjet-3.0.6/example/Makefile.am
+--- fastjet-3.0.6.orig/example/Makefile.am	2014-05-06 10:29:55.239632499 -0700
++++ fastjet-3.0.6/example/Makefile.am	2014-05-06 10:36:20.156246416 -0700
+@@ -43,7 +43,7 @@
+ 03_plugin_CXXFLAGS = $(AM_CXXFLAGS) $(CGAL_CPPFLAGS) -I$(srcdir)/../include
+ 03_plugin_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ 03_plugin_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++03_plugin_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ else
+ EXTRA_DIST += 03-plugin.cc
+ endif
+@@ -125,7 +125,7 @@
+ fastjet_areas_LDADD = ../src/libfastjet.la $(CGAL_LIBS)
+ if BUILD_PLUGIN_SISCONE
+ fastjet_areas_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_areas_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ 
+ fastjet_timing_plugins_SOURCES = fastjet_timing_plugins.cc CmdLine.cc
+@@ -135,7 +135,7 @@
+ fastjet_timing_plugins_LDADD += ../tools/libfastjettools.la 
+ if BUILD_PLUGIN_SISCONE
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/SISCone -I$(srcdir)/../plugins/SISCone/siscone
+-fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la ../plugins/SISCone/siscone/siscone/libsiscone.la ../plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++fastjet_timing_plugins_LDADD += ../plugins/SISCone/libSISConePlugin.la
+ endif
+ if BUILD_PLUGIN_CDFCONES
+ fastjet_timing_plugins_CXXFLAGS += -I$(srcdir)/../plugins/CDFCones
+diff -Nur fastjet-3.0.6.orig/plugins/SISCone/Makefile.am fastjet-3.0.6/plugins/SISCone/Makefile.am
+--- fastjet-3.0.6.orig/plugins/SISCone/Makefile.am	2014-05-06 10:29:55.250632584 -0700
++++ fastjet-3.0.6/plugins/SISCone/Makefile.am	2014-05-06 10:36:20.156246416 -0700
+@@ -1,11 +1,22 @@
+-SUBDIRS = siscone fastjet .
++SUBDIRS = fastjet .
+ 
+ if MONOLITHIC_PLUGINS
+ noinst_LTLIBRARIES = libSISConePlugin.la
+ else
+ lib_LTLIBRARIES = libSISConePlugin.la
+ endif
+-libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/siscone -I$(srcdir)/../../include
++libSISConePlugin_la_CXXFLAGS = $(AM_CXXFLAGS) -I$(srcdir) -I$(srcdir)/../../include
++
++if BUNDLE_SISCONE
++SUBDIRS += siscone
++libSISConePlugin_la_CXXFLAGS += -I$(srcdir)/siscone
++libSISConePlugin_la_LIBADD = \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/libsiscone.la \
++	$(top_builddir)/plugins/SISCone/siscone/siscone/spherical/libsiscone_spherical.la
++else
++libSISConePlugin_la_LIBADD = -lsiscone -lsiscone_spherical
++endif
++
+ libSISConePlugin_la_SOURCES = SISConePlugin.cc SISConeSphericalPlugin.cc
+ 
+ EXTRA_DIST = makefile.static
diff --git a/sci-physics/fastjet/metadata.xml b/sci-physics/fastjet/metadata.xml
new file mode 100644
index 000000000000..21ba005f8078
--- /dev/null
+++ b/sci-physics/fastjet/metadata.xml
@@ -0,0 +1,18 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+<herd>sci-physics</herd>
+<longdescription lang="en">
+  The FastJet package provides a fast implementation of the
+  longitudinally invariant kt longitudinally invariant inclusive
+  Cambridge/Aachen and anti-kt jet finders and a uniform interface
+  to external jet finders (notably SISCone) via a plugin
+  mechanism. It also includes tools for calculating jet areas and
+  performing background (pileup/UE) subtraction.
+</longdescription>
+<use>
+  <flag name="plugins"> Build all standard and C++ plugins </flag>
+  <flag name="cgal"> Use <pkg>sci-mathematics/cgal</pkg> instead of
+  bundled algorithms</flag>
+</use>
+</pkgmetadata>