sci-mathematics/mathematica: add 13.3.1

Closes: https://bugs.gentoo.org/913011
Co-authored-by: K Cameron <cameron@ieee.org>
Signed-off-by: Andrew Ammerlaan <andrewammerlaan@gentoo.org>

2 files changed, 189 insertions, 0 deletions

diff --git a/sci-mathematics/mathematica/Manifest b/sci-mathematics/mathematica/Manifest
index 35f7e055fb48..32d0e3f76004 100644
--- a/sci-mathematics/mathematica/Manifest
+++ b/sci-mathematics/mathematica/Manifest
@@ -6,4 +6,5 @@ DIST Mathematica_13.0.0_BNDL_LINUX.sh 5118155611 BLAKE2B ff15a9def53f7fb808b117e
 DIST Mathematica_13.0.1_BNDL_LINUX.sh 5094982487 BLAKE2B 55375b6038422fd5f11db36b33bc1162064c8d6a88575c982ce53b15678bf7b19dc62d66336b2105cbaa18a7fe86ba64f09db40e494c15d558f3ebd92ea025fe SHA512 cf4106202dfcf290f0dbe9e8062457eb705c2802f608e60f2810fc31e166ab60b5726c0c9bf675fadb02f5628af1dc2d25db8d02119dc63381eef8a88cdb6ec6
 DIST Mathematica_13.1.0_LINUX.sh 2032362325 BLAKE2B d044fe1ed3c71e6ebc2357c440af6feaeb360962aea32843abbdfe40f124a29bd07bf0c3a5a35f8bac29c97a7d23dbcd79967b6d0028d01e09c9b662fc1f2b95 SHA512 3d84313be4da86d72cc652b0ec7dbbbf6d815debbde4c9ab855f447dda36aeccb416e90d298f0be975ae86fdf55f20aa7597b0d96d291ebdf6e4eb0dc2ca5433
 DIST Mathematica_13.2.1_BNDL_LINUX.sh 5512713048 BLAKE2B 266a6979faab891c6fc10a1bc690ee21ad3af01413a2af29d81c27dffc92d8a10a2947aefe978dfcf16378e8f8f0d33145f99930840eeb2843d73270d2ad0de9 SHA512 2062b2ce7f6e7f33b8623607ef71475091b877112f03ffbc32671f513b71925aad8489f25e1b01ec75b5d4d7bee03bb2dc8b2627f767633de578ecae1d86b7f6
+DIST Mathematica_13.3.1_BNDL_LINUX.sh 6072605531 BLAKE2B f9e6c218bef266fd9cb86905299f4074377c29270379cee24ad473bedc628bb30739ea2b00b333d3c7546775c9c9fbf95ebd2ff1fa075d9cce447a20279a0a6c SHA512 b40f4301d928fb760e0f1421df2dee78118edb9360afbf117049c93b3ee1a84975c3987bbef4483ff4f67c3f8d63c66081df71f6800dd259f8735ca062723d3f
 DIST WLDocs_13.1.0_LINUX.sh 3546448755 BLAKE2B e5dbf6bf9cd60a313329df8591c281215039d7efa7c83a53f3b2d4e176765b62efae3ff04628ecf6905e76bbaf6867e87c96bd6188d13df2b981bea5a633335a SHA512 2107b37b30fc76974d040e746ca26ddb5df23bbacb9d8fabcd546a7cf789f1daaf70179c53890bed2385430665f601fbbc1f9829bf64f61068909ea8774f91d2
diff --git a/sci-mathematics/mathematica/mathematica-13.3.1.ebuild b/sci-mathematics/mathematica/mathematica-13.3.1.ebuild
new file mode 100644
index 000000000000..82dfd39089d6
--- /dev/null
+++ b/sci-mathematics/mathematica/mathematica-13.3.1.ebuild
@@ -0,0 +1,188 @@
+# Copyright 1999-2023 Gentoo Authors
+# Distributed under the terms of the GNU General Public License v2
+
+EAPI=8
+
+CHECKREQS_DISK_BUILD=20G
+inherit check-reqs desktop unpacker xdg
+
+DESCRIPTION="Wolfram Mathematica"
+HOMEPAGE="https://www.wolfram.com/mathematica/"
+SRC_URI="Mathematica_${PV}_BNDL_LINUX.sh"
+S="${WORKDIR}"
+
+LICENSE="all-rights-reserved"
+KEYWORDS="-* ~amd64"
+SLOT="0"
+IUSE="cuda doc ffmpeg R"
+
+RESTRICT="strip mirror bindist fetch"
+
+# Mathematica comes with a lot of bundled stuff. We should place here only what we
+# explicitly override with LD_PRELOAD.
+# RLink (libjri.so) requires dev-lang/R
+# FFmpegTools (FFmpegToolsSystem-6.0.so) requires media-video/ffmpeg-6.0
+# FFmpegTools (FFmpegToolsSystem-4.4.so) requires media-video/ffmpeg-4.4
+RDEPEND="
+	dev-qt/qt5compat:6
+	dev-qt/qtbase:6[eglfs,wayland]
+	dev-qt/qtsvg:6
+	dev-qt/qtwayland:6[compositor]
+	media-libs/freetype
+	virtual/libcrypt
+	cuda? (
+		>=dev-util/nvidia-cuda-toolkit-11
+		<dev-util/nvidia-cuda-toolkit-13
+		)
+	ffmpeg? ( || (
+		media-video/ffmpeg:0/56.58.58
+		media-video/ffmpeg:0/58.60.60
+		) )
+	R? ( dev-lang/R )
+"
+
+DEPEND="
+	${RDEPEND}
+"
+
+BDEPEND="
+	dev-util/patchelf
+"
+
+# we need this a few times
+MPN="Mathematica"
+MPV=$(ver_cut 1-2)
+M_BINARIES="MathKernel Mathematica WolframKernel wolframscript math mathematica mcc wolfram"
+M_TARGET="opt/Wolfram/${MPN}/${MPV}"
+
+# we might as well list all files in all QA variables...
+QA_PREBUILT="opt/*"
+
+src_unpack() {
+	/bin/sh "${DISTDIR}/${A}" --nox11 --keep --target "${S}/unpack_app" -- "-help" || die
+}
+
+src_install() {
+	local ARCH='-x86-64'
+
+	pushd "${S}/unpack_app" > /dev/null || die
+	# fix ACCESS DENIED issue when installer generate desktop files
+	sed -e "s|xdg-desktop-icon|xdg-dummy-command|g" -i "Unix/Installer/MathInstaller" || die
+	sed -e "s|xdg-desktop-menu|xdg-dummy-command|g" -i "Unix/Installer/MathInstaller" || die
+	sed -e "s|xdg-icon-resource|xdg-dummy-command|g" -i "Unix/Installer/MathInstaller" || die
+	sed -e "s|xdg-mime|xdg-dummy-command|g" -i "Unix/Installer/MathInstaller" || die
+	# fix ACCESS DENIED issue when installer check the avahi-daemon
+	sed -e "s|avahi-daemon -c|true|g" -i "Unix/Installer/MathInstaller" || die
+	# fix ACCESS DENIED issue when installing documentation
+	sed -e "s|\(exec ./MathInstaller\) -noprompt|\1 -auto -targetdir=${S}/${M_TARGET}/Documentation -noexec|" -i "Unix/Installer/MathInstaller" || die
+
+	/bin/sh "Unix/Installer/MathInstaller" -auto "-targetdir=${S}/${M_TARGET}" "-execdir=${S}/opt/bin" || die
+	popd > /dev/null || die
+
+	if ! use doc; then
+		einfo "Removing documentation"
+		rm -r "${S}/${M_TARGET}/Documentation" || die
+	fi
+
+	# fix world writable file QA problem for files
+	while IFS= read -r -d '' i; do
+		chmod o-w "${i}" || die
+	done < <(find "${S}/${M_TARGET}" -type f -print0)
+
+	einfo 'Removing MacOS- and Windows-specific files'
+	find "${S}/${M_TARGET}" -type d -\( -name Windows -o -name Windows-x86-64 \
+		-o -name MacOSX -o -name MacOSX-x86-64 -o -name Macintosh -\) \
+		-exec rm -rv {} + || die
+
+	if ! use cuda; then
+		einfo 'Removing cuda support'
+		rm -r "${S}/${M_TARGET}/SystemFiles/Components/CUDACompileTools/LibraryResources/Linux-x86-64/CUDAExtensions"*.so || die
+	fi
+
+	# Linux-x86-64/AllVersions is the supported version, other versions remove
+	einfo 'Removing unsupported RLink versions'
+	rm -r "${S}/${M_TARGET}/SystemFiles/Links/RLink/SystemFiles/Libraries/Linux-x86-64/3.5.0" || die
+	rm -r "${S}/${M_TARGET}/SystemFiles/Links/RLink/SystemFiles/Libraries/Linux-x86-64/3.6.0" || die
+	rm -r "${S}/${M_TARGET}/SystemFiles/Links/RLink/SystemFiles/Libraries/Linux/AllVersions" || die
+	# RLink can't use if R not used
+	if ! use R; then
+		einfo 'Removing RLink support'
+		rm -r "${S}/${M_TARGET}/SystemFiles/Links/RLink/SystemFiles/Libraries/Linux-x86-64/AllVersions/libjri.so" || die
+	fi
+	# FFmpegTools can't use if ffmpeg not used
+	if ! use ffmpeg; then
+		einfo 'Removing FFmpegTools support'
+		rm -r "${S}/${M_TARGET}/SystemFiles/Links/FFmpegTools/LibraryResources/Linux-x86-64/FFmpegToolsSystem"*.so || die
+	fi
+
+	# fix RPATH
+	while IFS= read -r -d '' i; do
+		# Use \x7fELF header to separate ELF executables and libraries
+		# Skip .o files and static files to avoid surprises
+		[[ $(od -t x1 -N 4 "${i}") == *"7f 45 4c 46"* ]] || continue
+		[[ -f "${i}" && "${i: -2}" != ".o" ]] || continue
+		[[ "$(file "${i}")" == *"dynamically"* ]] || continue
+		einfo "Fixing RPATH of ${i}"
+		patchelf --set-rpath \
+'/'"${M_TARGET}"'/SystemFiles/Libraries/Linux-x86-64:'\
+'/'"${M_TARGET}"'/SystemFiles/Libraries/Linux-x86-64/Qt/lib:'\
+'/'"${M_TARGET}"'/SystemFiles/Java/Linux-x86-64/lib:'\
+'/'"${M_TARGET}"'/SystemFiles/Java/Linux-x86-64/lib/jli:'\
+'$ORIGIN' "${i}" || \
+		die "patchelf failed on ${i}"
+	done < <(find "${S}/${M_TARGET}" -type f -print0)
+
+	# fix broken symbolic link
+	ln -sf "/${M_TARGET}/SystemFiles/Kernel/Binaries/Linux-x86-64/wolframscript" "${S}/${M_TARGET}/Executables/wolframscript" || die
+
+	# move all over
+	mv "${S}"/opt "${ED}"/opt || die
+
+	# the autogenerated symlinks point into sandbox, remove
+	rm "${ED}"/opt/bin/* || die
+
+	# install wrappers instead
+	for name in ${M_BINARIES} ; do
+		einfo "Generating wrapper for ${name}"
+		echo '#!/bin/sh' >> "${T}/${name}" || die
+		echo 'QT_QPA_PLATFORM="wayland;xcb"' >> "${T}/${name}" || die
+		echo "LD_PRELOAD=/usr/$(get_libdir)/libfreetype.so.6:/$(get_libdir)/libz.so.1:/$(get_libdir)/libcrypt.so.1 /${M_TARGET}/Executables/${name} \$*" \
+			>> "${T}/${name}" || die
+		dobin "${T}/${name}"
+	done
+	for name in ${M_BINARIES} ; do
+		einfo "Symlinking ${name} to /opt/bin"
+		dosym ../../usr/bin/${name} /opt/bin/${name}
+	done
+
+	# fix some embedded paths and install desktop files
+	for filename in $(find "${ED}/${M_TARGET}/SystemFiles/Installation" -name "wolfram-mathematica*.desktop") ; do
+		einfo "Fixing ${filename}"
+		sed -e "s|${S}||g" -e 's|^\t\t||g' -i "${filename}" || die
+		echo "Categories=Physics;Science;Engineering;2DGraphics;Graphics;" >> "${filename}" || die
+		domenu "${filename}"
+	done
+
+	# install icons
+	for iconsize in 16 32 64 128 256; do
+		local iconfile="${ED}/${M_TARGET}/SystemFiles/FrontEnd/SystemResources/X/App-${iconsize}.png"
+		if [ -e "${iconfile}" ]; then
+			newicon -s "${iconsize}" "${iconfile}" wolfram-mathematica.png
+		fi
+	done
+
+	# install mime types
+	insinto /usr/share/mime/application
+	for filename in $(find "${ED}/${M_TARGET}/SystemFiles/Installation" -name "application-*.xml"); do
+		basefilename=$(basename "${filename}")
+		mv "${filename}" "${T}/${basefilename#application-}" || die
+		doins "${T}/${basefilename#application-}"
+	done
+}
+
+pkg_nofetch() {
+	einfo "Please place the Wolfram Mathematica installation file ${SRC_URI}"
+	einfo "in your \$\{DISTDIR\}."
+	einfo "Note that to actually run and use Mathematica you need a valid license."
+	einfo "Wolfram provides time-limited evaluation licenses at ${HOMEPAGE}"
+}