diff options
| author |   David Seifert <soap@gentoo.org> | 2016-09-20 21:37:27 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2016-09-20 23:06:07 +0200 |
| commit | c44d450a927693cd4d0ebb694cbebd0afcfef47a (patch) | |
| tree | e85d0072f3b05c4e2531c90439115e954f7f7e31 /sci-libs/libgenome | |
| parent | sci-biology/prank: Remove old ebuilds (diff) | |
| download | gentoo-c44d450a927693cd4d0ebb694cbebd0afcfef47a.tar.gz gentoo-c44d450a927693cd4d0ebb694cbebd0afcfef47a.tar.bz2 gentoo-c44d450a927693cd4d0ebb694cbebd0afcfef47a.zip | |
sci-libs/libgenome: Allow for compiling with GCC 6
Gentoo-bug: 594372
* EAPI=6
Package-Manager: portage-2.3.1
Diffstat (limited to 'sci-libs/libgenome')
| -rw-r--r-- | sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch | 30 | ||||
| -rw-r--r-- | sci-libs/libgenome/libgenome-1.3-r1.ebuild | 26 |
2 files changed, 47 insertions, 9 deletions
diff --git a/sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch b/sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch new file mode 100644 index 000000000000..ffe30ef91fa2 --- /dev/null +++ b/sci-libs/libgenome/files/libgenome-1.3-fix-c++14.patch @@ -0,0 +1,30 @@ +Fix building with C++14, which errors out due to collisions with internal abs() function. +See also: https://bugs.gentoo.org/show_bug.cgi?id=594372 + +--- a/libGenome/gnDefs.h ++++ b/libGenome/gnDefs.h +@@ -175,13 +175,6 @@ +
+ #define CONTIG_SECTION_SIZE 3
+
+-// some compilers don't have abs() for 64 bit ints
+-#if (defined(__GNUG__) && ( __GNUC__ <= 2 )) || defined(__INTEL_COMPILER) || (defined _MSC_VER && defined __cplusplus)
+-
+-int64 abs( int64 a );
+-
+-#endif
+-
+ #ifdef __cplusplus
+ namespace genome {
+ #endif
+--- a/libGenome/Makefile.am ++++ b/libGenome/Makefile.am +@@ -29,7 +29,7 @@ + gnGenomeSpec.cpp gnLocation.cpp \ + gnRAWSource.cpp gnBaseFeature.cpp gnSEQSource.cpp gnSequence.cpp \ + gnContigSpec.cpp gnSourceHeader.cpp gnException.cpp \ +-gnFastTranslator.cpp gnPosSpecificTranslator.cpp gnDefs.cpp ++gnFastTranslator.cpp gnPosSpecificTranslator.cpp + + library_includedir=$(includedir)/$(GENERIC_LIBRARY_NAME)-$(GENERIC_API_VERSION)/$(GENERIC_LIBRARY_NAME) + diff --git a/sci-libs/libgenome/libgenome-1.3-r1.ebuild b/sci-libs/libgenome/libgenome-1.3-r1.ebuild index 77c6ca7ec1d5..a52575cbf169 100644 --- a/sci-libs/libgenome/libgenome-1.3-r1.ebuild +++ b/sci-libs/libgenome/libgenome-1.3-r1.ebuild @@ -1,32 +1,40 @@ -# Copyright 1999-2009 Gentoo Foundation +# Copyright 1999-2016 Gentoo Foundation # Distributed under the terms of the GNU General Public License v2 # $Id$ -EAPI="2" +EAPI=6 -MY_TAG="mauve-2-3-0-release" -#ESVN_REPO_URI="https://mauve.svn.sourceforge.net/svnroot/mauve/libGenome/tags/${MY_TAG}" - -#inherit subversion autotools inherit autotools DESCRIPTION="Library for sci-biology/mauve" HOMEPAGE="http://gel.ahabs.wisc.edu/mauve/" -#SRC_URI="" SRC_URI="mirror://gentoo/${PF}.tar.bz2" LICENSE="GPL-2" SLOT="0" -IUSE="doc" +IUSE="doc static-libs" KEYWORDS="~amd64 ~x86" DEPEND="doc? ( app-doc/doxygen )" RDEPEND="" +PATCHES=( "${FILESDIR}/${PN}-1.3-fix-c++14.patch" ) + src_prepare() { + default + rm libGenome/gnDefs.cpp || die eautoreconf } +src_configure() { + econf \ + --enable-shared \ + $(use_enable static-libs static) +} + src_install() { - emake install DESTDIR="${D}" || die + default + + # package provides .pc files + find "${D}" -name '*.la' -delete || die } |