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| author |   Sergey Popov <pinkbyte@gentoo.org> | 2015-10-19 20:11:00 +0300 |
|---|---|---|
| committer | Sergey Popov <pinkbyte@gentoo.org> | 2015-10-19 20:11:21 +0300 |
| commit | c337e46391e9fbbc1e639f860cd7b3eb72bdb536 (patch) | |
| tree | e7937dcd6818b8ddf917e63e96c211089de37e69 /sci-biology/seqan | |
| parent | dev-python/coverage: Add pypy* support (diff) | |
| download | gentoo-c337e46391e9fbbc1e639f860cd7b3eb72bdb536.tar.gz gentoo-c337e46391e9fbbc1e639f860cd7b3eb72bdb536.tar.bz2 gentoo-c337e46391e9fbbc1e639f860cd7b3eb72bdb536.zip | |
sci-biology/seqan: correct dependency on sci-biology/samtools
Seqan 1.3.1 does not compile with samtools greater than 0.1.19
Also it does not compile with GCC 4.9 or higher, so restrict this too
Gentoo-Bug: 514250
Package-Manager: portage-2.2.20
Diffstat (limited to 'sci-biology/seqan')
| -rw-r--r-- | sci-biology/seqan/seqan-1.3.1-r1.ebuild | 10 |
1 files changed, 9 insertions, 1 deletions
diff --git a/sci-biology/seqan/seqan-1.3.1-r1.ebuild b/sci-biology/seqan/seqan-1.3.1-r1.ebuild index a74eac3ccfce..2bcb7f651f5b 100644 --- a/sci-biology/seqan/seqan-1.3.1-r1.ebuild +++ b/sci-biology/seqan/seqan-1.3.1-r1.ebuild @@ -20,11 +20,19 @@ IUSE="" REQUIRED_USE="${PYTHON_REQUIRED_USE}" RDEPEND="${PYTHON_DEPS} - sci-biology/samtools" + ~sci-biology/samtools-0.1.19" DEPEND="${RDEPEND}" S="${WORKDIR}"/${P}/cmake +pkg_setup() { + if [[ ${MERGE_TYPE} != binary ]]; then + [[ $(gcc-major-version) -gt 4 ]] || \ + ( [[ $(gcc-major-version) -eq 4 && $(gcc-minor-version) -gt 8 ]] ) \ + && die "Sorry, but gcc 4.9 or higher is unsupported" + fi +} + src_prepare() { append-cppflags -I"${EPREFIX}/usr/include/bam" rm -rf "${S}"/../lib/samtools || die |