diff options
| author |   David Seifert <soap@gentoo.org> | 2021-10-11 16:55:10 +0200 |
|---|---|---|
| committer | David Seifert <soap@gentoo.org> | 2021-10-11 16:55:10 +0200 |
| commit | 839c7ac1d40d861275bfb91957ce439f9502987b (patch) | |
| tree | 9b0a0788740d1bebf81f22f1db6c7f14eae15883 /sci-biology/samtools | |
| parent | sci-biology/bcftools: drop 1.10.2 (diff) | |
| download | gentoo-839c7ac1d40d861275bfb91957ce439f9502987b.tar.gz gentoo-839c7ac1d40d861275bfb91957ce439f9502987b.tar.bz2 gentoo-839c7ac1d40d861275bfb91957ce439f9502987b.zip | |
sci-biology/samtools: drop 1.10-r1
Signed-off-by: David Seifert <soap@gentoo.org>
Diffstat (limited to 'sci-biology/samtools')
| -rw-r--r-- | sci-biology/samtools/Manifest | 1 | ||||
| -rw-r--r-- | sci-biology/samtools/samtools-1.10-r1.ebuild | 56 |
2 files changed, 0 insertions, 57 deletions
diff --git a/sci-biology/samtools/Manifest b/sci-biology/samtools/Manifest index 2128bb6db9c2..6cee5d727e16 100644 --- a/sci-biology/samtools/Manifest +++ b/sci-biology/samtools/Manifest @@ -1,3 +1,2 @@ DIST samtools-0.1.20.tar.gz 566387 BLAKE2B a62d74c408877754af50f5e5fea0e2289ec1e0c9f25013ed0d039bfe8ef61108600d917f8c9d356e98aca632795b4eb0f01ea1b54526a652577fb74a38a433c2 SHA512 15bd8cf401d14c1ab4faa591b6054f5ea9731c4e966f37f71d33d9081a270cfeb91e8a3d80c631e0725b49da81387f824c206e8c21553ad554d0cfc5c238a6e5 -DIST samtools-1.10.tar.bz2 4721173 BLAKE2B 103c71ec5740eac151a4fc40d67286ee00123c7befd5f654cf5c89812bda44f82b38ab662a4a3216ac84434cabab49500b903612137f97f89a7ea38063e8fc08 SHA512 828ec2638592b440e06b81eafc57634416ab54dac6caaecb06f22a90e9bf99da1fd8bb54509cb98591899c4e097ac9038ee5d57ea7bfe1a18967cde4018d840a DIST samtools-1.13.tar.bz2 7984998 BLAKE2B e46161c43d4ea51c3ef1d9ed74c40c21b70aef80aa903a49b94b3d468f9211e9147281204eb61b9843c071f09ead08c924e3d624d4df76a1d02ba9ceb318399a SHA512 647fbad2935dfc3e4f85da257a6ee59af40078024a3b77f117dada5f55846e381a096db3cf62a63c04ae95dfc9fadb1d515b8d618e6388bc93f0b2ac85eaf6ea diff --git a/sci-biology/samtools/samtools-1.10-r1.ebuild b/sci-biology/samtools/samtools-1.10-r1.ebuild deleted file mode 100644 index 940895616906..000000000000 --- a/sci-biology/samtools/samtools-1.10-r1.ebuild +++ /dev/null @@ -1,56 +0,0 @@ -# Copyright 1999-2021 Gentoo Authors -# Distributed under the terms of the GNU General Public License v2 - -EAPI=7 - -inherit autotools toolchain-funcs - -DESCRIPTION="Utilities for analysing and manipulating the SAM/BAM alignment formats" -HOMEPAGE="http://www.htslib.org/" -SRC_URI="mirror://sourceforge/${PN}/${P}.tar.bz2" - -LICENSE="MIT" -SLOT="0" -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" - -RDEPEND=" - dev-lang/perl - =sci-libs/htslib-${PV}* - sys-libs/ncurses:=[unicode(+)] - sys-libs/zlib:=" -DEPEND="${RDEPEND}" -BDEPEND="virtual/pkgconfig" - -src_prepare() { - default - - # remove bundled htslib - rm -r htslib-* || die - - eautoreconf -} - -src_configure() { - econf \ - --with-ncurses \ - --with-htslib=system \ - CURSES_LIB="$($(tc-getPKG_CONFIG) --libs ncursesw)" -} - -src_compile() { - emake AR="$(tc-getAR)" -} - -src_test() { - # the tview test diffs expect 80-columns output - unset COLUMNS - - default -} - -src_install() { - default - - dodoc -r examples - docompress -x /usr/share/doc/${PF}/examples -} |