2022-01-22 22:39:26 UTC

53 files changed, 85 insertions, 85 deletions

diff --git a/metadata/md5-cache/sci-biology/abyss-2.3.4 b/metadata/md5-cache/sci-biology/abyss-2.3.4
index 32388e98ce53..8d60160691cc 100644
--- a/metadata/md5-cache/sci-biology/abyss-2.3.4
+++ b/metadata/md5-cache/sci-biology/abyss-2.3.4
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare pretend setup
 DEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3 misc-haskell? ( dev-lang/ghc )
 DESCRIPTION=Assembly By Short Sequences - a de novo, parallel, paired-end sequence assembler
@@ -11,5 +11,5 @@ LICENSE=GPL-3
 RDEPEND=dev-cpp/sparsehash dev-libs/boost:= misc-haskell? ( dev-libs/gmp:0= dev-libs/libffi:0= ) sys-cluster/openmpi dev-db/sqlite:3
 SLOT=0
 SRC_URI=https://github.com/bcgsc/abyss/archive/2.3.4.tar.gz -> abyss-2.3.4.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=9a708eff89b221551fbb0bcc299ccfa3
diff --git a/metadata/md5-cache/sci-biology/bamtools-2.5.2 b/metadata/md5-cache/sci-biology/bamtools-2.5.2
index 3bf65538c751..cf55259f0cde 100644
--- a/metadata/md5-cache/sci-biology/bamtools-2.5.2
+++ b/metadata/md5-cache/sci-biology/bamtools-2.5.2
@@ -10,5 +10,5 @@ LICENSE=MIT
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/2.5.2
 SRC_URI=https://github.com/pezmaster31/bamtools/archive/v2.5.2.tar.gz -> bamtools-2.5.2.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
 _md5_=efdfbdbf4181a018ee9965d5c16be71f
diff --git a/metadata/md5-cache/sci-biology/bamtools-9999 b/metadata/md5-cache/sci-biology/bamtools-9999
index b19cfc2a2ebc..17001634e422 100644
--- a/metadata/md5-cache/sci-biology/bamtools-9999
+++ b/metadata/md5-cache/sci-biology/bamtools-9999
@@ -9,5 +9,5 @@ LICENSE=MIT
 PROPERTIES=live
 RDEPEND=>=dev-libs/jsoncpp-1.8.0:= sys-libs/zlib:=
 SLOT=0/9999
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6	git-r3	cc875b0c1e9b3bdac1af0f82f3ba29da
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6	git-r3	cc875b0c1e9b3bdac1af0f82f3ba29da
 _md5_=a2299dc6ca850c1c25582656d7586681
diff --git a/metadata/md5-cache/sci-biology/bfast-0.7.0a b/metadata/md5-cache/sci-biology/bfast-0.7.0a
index cbf1b211948c..6b931106f4f5 100644
--- a/metadata/md5-cache/sci-biology/bfast-0.7.0a
+++ b/metadata/md5-cache/sci-biology/bfast-0.7.0a
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=prepare
 DESCRIPTION=Blat-like Fast Accurate Search Tool
 EAPI=7
@@ -11,5 +11,5 @@ RDEPEND=dev-perl/XML-Simple
 RESTRICT=test
 SLOT=0
 SRC_URI=mirror://sourceforge/bfast/bfast-0.7.0a.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=e64abecddb86e9860edc80410f299d83
diff --git a/metadata/md5-cache/sci-biology/biogrep-1.0-r2 b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
index 6a66b550c019..4522699ca37e 100644
--- a/metadata/md5-cache/sci-biology/biogrep-1.0-r2
+++ b/metadata/md5-cache/sci-biology/biogrep-1.0-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=install prepare
-DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Multithreaded tool for matching large sets of patterns against biosequence DBs
 EAPI=6
 HOMEPAGE=http://stephanopoulos.openwetware.org/BIOGREP.html
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://www.openwetware.org/images/3/3d/Biogrep-1.0.tar.gz -> biogrep-1.0.tar.gz doc? ( http://www.openwetware.org/images/4/49/Biogrep.pdf -> biogrep-1.0.pdf )
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=9731727dae2a2514bcaa486b0059272e
diff --git a/metadata/md5-cache/sci-biology/cd-hit-4.6.6 b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
index 08b915577f12..d2ec085685cd 100644
--- a/metadata/md5-cache/sci-biology/cd-hit-4.6.6
+++ b/metadata/md5-cache/sci-biology/cd-hit-4.6.6
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 RDEPEND=dev-lang/perl
 SLOT=0
 SRC_URI=https://github.com/weizhongli/cdhit/releases/download/V4.6.6/cd-hit-v4.6.6-2016-0711.tar.gz -> cd-hit-4.6.6.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=bbe0ae10275a73485487e08f19f4ac1b
diff --git a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4 b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
index ffa32e303773..c2bcaf363a8f 100644
--- a/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
+++ b/metadata/md5-cache/sci-biology/clustal-omega-1.2.4
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=dev-libs/argtable sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/argtable sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Scalable multiple alignment of protein sequences
 EAPI=6
 HOMEPAGE=http://www.clustal.org/omega/
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=dev-libs/argtable
 SLOT=0
 SRC_URI=http://www.clustal.org/omega/clustal-omega-1.2.4.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=9ade45d2e283bc5fcc7eef16725e18ae
diff --git a/metadata/md5-cache/sci-biology/consed-29 b/metadata/md5-cache/sci-biology/consed-29
index e3f0b86addc3..59534e5d7759 100644
--- a/metadata/md5-cache/sci-biology/consed-29
+++ b/metadata/md5-cache/sci-biology/consed-29
@@ -11,5 +11,5 @@ RDEPEND=x11-libs/libX11 x11-libs/motif:0 sci-biology/samtools:0.1-legacy dev-lan
 RESTRICT=fetch
 SLOT=0
 SRC_URI=consed-29-sources.tar.gz consed-29-linux.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=1e30f1827727dab34c75c8c026745369
diff --git a/metadata/md5-cache/sci-biology/dialign2-2.2.1 b/metadata/md5-cache/sci-biology/dialign2-2.2.1
index 032c3a7a1e1c..ef8d6e978ff8 100644
--- a/metadata/md5-cache/sci-biology/dialign2-2.2.1
+++ b/metadata/md5-cache/sci-biology/dialign2-2.2.1
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux
 LICENSE=LGPL-2.1
 SLOT=0
 SRC_URI=http://bibiserv.techfak.uni-bielefeld.de/applications/dialign/resources/downloads/dialign-2.2.1-src.tar.gz
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 _md5_=3761a69a47f38308f54ae0b051361ed6
diff --git a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
index e1dedf122bef..da43c7b3ce5a 100644
--- a/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-cbstools-1.0.0.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Applications from the CBS group
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CBSTOOLS-1.0.0.660.tar.gz -> embassy-cbstools-1.0.0.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=77305643fe2a87a5fac7d915688baa6a
diff --git a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660 b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
index a1f953ecc2a6..d0997e75099b 100644
--- a/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-clustalomega-1.1.0.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Clustal Omega - Multiple Sequence Alignment
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/clustal-omega dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/CLUSTALOMEGA-1.1.0.660.tar.gz -> embassy-clustalomega-1.1.0.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=58b5684a48770c482660c463cca0df76
diff --git a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
index 8abe9fa4b16d..f2bd8d1d1328 100644
--- a/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domainatrix-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain analysis add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMAINATRIX-0.1.660.tar.gz -> embassy-domainatrix-0.1.660.tar.gz
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+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=20f6c7abf908473570516ff49847a320
diff --git a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
index 81ea84020260..eda1423822fe 100644
--- a/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domalign-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain alignment add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMALIGN-0.1.660.tar.gz -> embassy-domalign-0.1.660.tar.gz
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+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=fc6983ff5591fa7825d4cd99d376c861
diff --git a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660 b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
index abc05cb225fd..66c704721de4 100644
--- a/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-domsearch-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein domain search add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.660.tar.gz -> embassy-domsearch-0.1.660.tar.gz
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+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=00bdcd88d6e9743af4531e223888195b
diff --git a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660 b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
index bad8bd5f0969..b39aaa805577 100644
--- a/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
+++ b/metadata/md5-cache/sci-biology/embassy-emnu-1.05.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Simple menu of EMBOSS applications
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMNU-1.05.660.tar.gz -> embassy-emnu-1.05.660.tar.gz
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 _md5_=54738204e5b5aeb9aa0216f7c53c77df
diff --git a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660 b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
index 848e1fe0c04f..fbb262dbb62b 100644
--- a/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-esim4-1.0.0.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of sim4 - Alignment of cDNA and genomic DNA
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/ESIM4-1.0.0.660.tar.gz -> embassy-esim4-1.0.0.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=63d13362b3c8b045b78ed452697b59f3
diff --git a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660 b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
index 83700379aece..478215bc6265 100644
--- a/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-hmmer-2.3.2.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of HMMER wrapper - sequence analysis with profile HMMs
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sci-biology/hmmer:2 dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/HMMER-2.3.2.660.tar.gz -> embassy-hmmer-2.3.2.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=c5399e3d4e7e59aaa70e6477a41a7345
diff --git a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660 b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
index caf2875bcc0b..bf131a66b032 100644
--- a/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-iprscan-4.3.1.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of InterProScan motif detection add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/IPRSCAN-4.3.1.660.tar.gz -> embassy-iprscan-4.3.1.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=88c3ac6be6849f4230f25bf463931561
diff --git a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660 b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
index 259f250d7d9c..bf16b36974b1 100644
--- a/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-mse-3.0.0.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of MSE - Multiple Sequence Screen Editor
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=sys-libs/ncurses:0= dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/MSE-3.0.0.660.tar.gz -> embassy-mse-3.0.0.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=c9843cceb68b918a80ed15c2043942d3
diff --git a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660 b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
index 2fbc5db925e9..cc547ea4f576 100644
--- a/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
+++ b/metadata/md5-cache/sci-biology/embassy-phylipnew-3.69.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of The Phylogeny Inference Package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2 free-noncomm
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/PHYLIPNEW-3.69.660.tar.gz -> embassy-phylipnew-3.69.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=9ecb2590e9a1ae2353dafa387e89d48c
diff --git a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660 b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
index 1b9b56e752e6..3cba4b59293c 100644
--- a/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-signature-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein signature add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/SIGNATURE-0.1.660.tar.gz -> embassy-signature-0.1.660.tar.gz
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+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=0be4d65f424916bbe6d7f507fed3014f
diff --git a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660 b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
index c825cf182cb3..874fdae2caa8 100644
--- a/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
+++ b/metadata/md5-cache/sci-biology/embassy-structure-0.1.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Protein structure add-on package
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/STRUCTURE-0.1.660.tar.gz -> embassy-structure-0.1.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=a0f67c8d9181b193f43eb5e99fdbe92f
diff --git a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660 b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
index 4aeae7fc50b8..a7931485a060 100644
--- a/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
+++ b/metadata/md5-cache/sci-biology/embassy-topo-2.0.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Transmembrane protein display
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/TOPO-2.0.660.tar.gz -> embassy-topo-2.0.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=9ecbee609930ce8d1c14b72746c0ff64
diff --git a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660 b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
index 32316c68be9c..04be649a3b21 100644
--- a/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
+++ b/metadata/md5-cache/sci-biology/embassy-vienna-1.7.2.660
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 DESCRIPTION=EMBOSS integrated version of Vienna RNA package - RNA folding
@@ -11,5 +11,5 @@ LICENSE=LGPL-2 GPL-2
 RDEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt ) >=sci-biology/emboss-6.6.0-r1[mysql=,pdf=,png=,postgres=,X=]
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/VIENNA-1.7.2.660.tar.gz -> embassy-vienna-1.7.2.660.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a
 _md5_=a8689fa9b1b33a787474fc8f11e65998
diff --git a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1 b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
index ef5f72dfbf7b..bf0dd52a32d5 100644
--- a/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
+++ b/metadata/md5-cache/sci-biology/emboss-6.6.0-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install postinst prepare
 DEPEND=dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 DESCRIPTION=The European Molecular Biology Open Software Suite - A sequence analysis package
@@ -12,5 +12,5 @@ PDEPEND=!minimal? ( sci-biology/aaindex sci-biology/cutg sci-biology/primer3 sci
 RDEPEND=!games-action/xbomber !sys-devel/cons dev-libs/expat dev-libs/libpcre:3 sci-libs/plplot:= sys-libs/zlib mysql? ( dev-db/mysql-connector-c:0= ) pdf? ( media-libs/libharu:= ) png? ( media-libs/gd:2=[png] ) postgres? ( dev-db/postgresql:= ) X? ( x11-libs/libXt )
 SLOT=0
 SRC_URI=ftp://emboss.open-bio.org/pub/EMBOSS/EMBOSS-6.6.0.tar.gz https://dev.gentoo.org/~soap/distfiles/emboss-6.6.0-patches.tar.xz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	emboss-r2	6149b9a50119f07968449cfd6874508a	readme.gentoo-r1	eebd0164fe61f4f7b64a683e83fdceb1
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	emboss-r2	6149b9a50119f07968449cfd6874508a	readme.gentoo-r1	eebd0164fe61f4f7b64a683e83fdceb1
 _md5_=ca77e598a1b176f454ece551aad686da
diff --git a/metadata/md5-cache/sci-biology/eugene-4.1d b/metadata/md5-cache/sci-biology/eugene-4.1d
index eeb714d92bf0..bdcff8a2e281 100644
--- a/metadata/md5-cache/sci-biology/eugene-4.1d
+++ b/metadata/md5-cache/sci-biology/eugene-4.1d
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=media-libs/gd[png] media-libs/libpng:0= sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/gd[png] media-libs/libpng:0= sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Prokaryotic and Eukaryotic gene predictor
 EAPI=6
 HOMEPAGE=http://eugene.toulouse.inra.fr/
@@ -10,5 +10,5 @@ RDEPEND=media-libs/gd[png] media-libs/libpng:0=
 RESTRICT=test
 SLOT=0
 SRC_URI=https://mulcyber.toulouse.inra.fr/frs/download.php/1359/eugene-4.1d.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=683d1e7f9daeda6cd20b92117330ea81
diff --git a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2 b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
index 0aef0b8e399f..6460753a809f 100644
--- a/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
+++ b/metadata/md5-cache/sci-biology/exonerate-2.2.0-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=dev-libs/glib:2 sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dev-libs/glib:2 sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Generic tool for pairwise sequence comparison
 EAPI=6
 HOMEPAGE=https://www.ebi.ac.uk/about/vertebrate-genomics/software/exonerate
@@ -12,5 +12,5 @@ REQUIRED_USE=test? ( utils )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://ftp.ebi.ac.uk/pub/software/vertebrategenomics/exonerate/exonerate-2.2.0.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=05c99b447503c7a3fae4594cd126939a
diff --git a/metadata/md5-cache/sci-biology/express-1.5.1 b/metadata/md5-cache/sci-biology/express-1.5.1
index 984d1c19ccdf..1c04ce950d2b 100644
--- a/metadata/md5-cache/sci-biology/express-1.5.1
+++ b/metadata/md5-cache/sci-biology/express-1.5.1
@@ -10,5 +10,5 @@ LICENSE=Artistic
 RDEPEND=>=dev-libs/boost-1.52.0:= dev-libs/protobuf dev-util/google-perftools sci-biology/bamtools sys-libs/zlib
 SLOT=0
 SRC_URI=https://pachterlab.github.io/eXpress/downloads/express-1.5.1/express-1.5.1-src.tgz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
 _md5_=b4fcbc714ea460615318f4baa4bc347a
diff --git a/metadata/md5-cache/sci-biology/fasta-36.3.5e b/metadata/md5-cache/sci-biology/fasta-36.3.5e
index 7426a3fff071..2636a2ce3fdb 100644
--- a/metadata/md5-cache/sci-biology/fasta-36.3.5e
+++ b/metadata/md5-cache/sci-biology/fasta-36.3.5e
@@ -10,5 +10,5 @@ LICENSE=fasta
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=http://faculty.virginia.edu/wrpearson/fasta/fasta36/fasta-36.3.5e.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=43c2cf221a4fd397bebdbe11749a1707
diff --git a/metadata/md5-cache/sci-biology/fasttree-2.1.11 b/metadata/md5-cache/sci-biology/fasttree-2.1.11
index ad6c5244b420..29c3243a61fe 100644
--- a/metadata/md5-cache/sci-biology/fasttree-2.1.11
+++ b/metadata/md5-cache/sci-biology/fasttree-2.1.11
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 REQUIRED_USE=?? ( double-precision cpu_flags_x86_sse3 )
 SLOT=0
 SRC_URI=http://www.microbesonline.org/fasttree/FastTree-2.1.11.c http://www.microbesonline.org/fasttree/FastTreeUPGMA.c -> FastTreeUPGMA-2.1.11.c http://www.microbesonline.org/fasttree/MOTreeComparison.tar.gz -> MOTreeComparison-2.1.11.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
 _md5_=4a94b8db43f0aadb5ece67757ccbe635
diff --git a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14 b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
index 3e7132e002f8..180328d4aff3 100644
--- a/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
+++ b/metadata/md5-cache/sci-biology/fastx_toolkit-0.0.14
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=sci-biology/libgtextutils virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sci-biology/libgtextutils virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Tools for Short Read FASTA/FASTQ file processing
 EAPI=6
 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit
@@ -9,5 +9,5 @@ LICENSE=AGPL-3
 RDEPEND=dev-perl/PerlIO-gzip dev-perl/GDGraph sci-biology/libgtextutils:= sci-visualization/gnuplot
 SLOT=0
 SRC_URI=https://github.com/agordon/fastx_toolkit/releases/download/0.0.14/fastx_toolkit-0.0.14.tar.bz2
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=c3bb0edd6b01a31019cf5fd59e22122a
diff --git a/metadata/md5-cache/sci-biology/iedera-1.05-r1 b/metadata/md5-cache/sci-biology/iedera-1.05-r1
index 7b8d8a255860..a45576204802 100644
--- a/metadata/md5-cache/sci-biology/iedera-1.05-r1
+++ b/metadata/md5-cache/sci-biology/iedera-1.05-r1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=A subset seed design tool for DNA sequence alignment
 EAPI=6
 HOMEPAGE=http://bioinfo.lifl.fr/yass/iedera.php
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/iedera-1.05.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=ce77e1e27bd52fed2fd2af52744d6288
diff --git a/metadata/md5-cache/sci-biology/kallisto-0.46.2 b/metadata/md5-cache/sci-biology/kallisto-0.46.2
index 862e15f88a9b..5a3aa5d257b4 100644
--- a/metadata/md5-cache/sci-biology/kallisto-0.46.2
+++ b/metadata/md5-cache/sci-biology/kallisto-0.46.2
@@ -12,5 +12,5 @@ RDEPEND=sci-libs/htslib:= sys-libs/zlib:= hdf5? ( sci-libs/hdf5:= )
 RESTRICT=!test? ( test )
 SLOT=0
 SRC_URI=https://github.com/pachterlab/kallisto/archive/v0.46.2.tar.gz -> kallisto-0.46.2.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
 _md5_=1b739cad0275e6dc5a320723611b78e9
diff --git a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1 b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
index 5248985ecfe2..1279cd6645e6 100644
--- a/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
+++ b/metadata/md5-cache/sci-biology/libgtextutils-0.6.1
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure install prepare
-DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Gordon Text utils Library
 EAPI=6
 HOMEPAGE=http://hannonlab.cshl.edu/fastx_toolkit/
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=AGPL-3
 SLOT=0/0
 SRC_URI=http://hannonlab.cshl.edu/fastx_toolkit/libgtextutils-0.6.1.tar.bz2
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=867c9b9e4eee26ad2a76ff6ff0594f52
diff --git a/metadata/md5-cache/sci-biology/mafft-7.305 b/metadata/md5-cache/sci-biology/mafft-7.305
index 6ab126a197bf..bd4647aedbf3 100644
--- a/metadata/md5-cache/sci-biology/mafft-7.305
+++ b/metadata/md5-cache/sci-biology/mafft-7.305
@@ -8,5 +8,5 @@ KEYWORDS=~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos
 LICENSE=BSD
 SLOT=0
 SRC_URI=https://mafft.cbrc.jp/alignment/software/mafft-7.305-without-extensions-src.tgz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=0f3bc4071e292477254a6b10ab15b328
diff --git a/metadata/md5-cache/sci-biology/maq-0.7.1-r2 b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
index 91ca5abb42f5..9ee7d3498002 100644
--- a/metadata/md5-cache/sci-biology/maq-0.7.1-r2
+++ b/metadata/md5-cache/sci-biology/maq-0.7.1-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=install prepare
-DEPEND=sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Mapping and Assembly with Qualities, mapping NGS reads to reference genomes
 EAPI=6
 HOMEPAGE=http://maq.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=sys-libs/zlib
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maq-0.7.1.tar.bz2 mirror://sourceforge/maq/calib-36.dat.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
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 _md5_=39ffb0025210075a8d7d7f6f81f8da56
diff --git a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3 b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
index 3d5a439ad5df..6742388ab663 100644
--- a/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
+++ b/metadata/md5-cache/sci-biology/maqview-0.2.5-r3
@@ -1,5 +1,5 @@
 DEFINED_PHASES=prepare
-DEPEND=media-libs/freeglut sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=media-libs/freeglut sys-libs/zlib sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=GUI for sci-biology/maq, a short read mapping assembler
 EAPI=6
 HOMEPAGE=http://maq.sourceforge.net/
@@ -9,5 +9,5 @@ LICENSE=GPL-3
 RDEPEND=media-libs/freeglut sys-libs/zlib sci-biology/maq
 SLOT=0
 SRC_URI=mirror://sourceforge/maq/maqview-0.2.5.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=dee50558d10e75ff9e96f4c3f177c55f
diff --git a/metadata/md5-cache/sci-biology/mcl-14.137 b/metadata/md5-cache/sci-biology/mcl-14.137
index a90d9a51a4ed..6548f3e8e5e8 100644
--- a/metadata/md5-cache/sci-biology/mcl-14.137
+++ b/metadata/md5-cache/sci-biology/mcl-14.137
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare
 DESCRIPTION=A Markov Cluster Algorithm implementation
 EAPI=7
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=http://micans.org/mcl/src/mcl-14-137.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=9779366f51f2fea08274072a9a019159
diff --git a/metadata/md5-cache/sci-biology/mosaik-2.2.30 b/metadata/md5-cache/sci-biology/mosaik-2.2.30
index f1f1d1e58c2e..cdab8c6a5e6c 100644
--- a/metadata/md5-cache/sci-biology/mosaik-2.2.30
+++ b/metadata/md5-cache/sci-biology/mosaik-2.2.30
@@ -7,5 +7,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://github.com/wanpinglee/MOSAIK/archive/5c25216d3522d6a33e53875cd76a6d65001e4e67.tar.gz -> mosaik-2.2.30.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	vcs-snapshot	b1abf460a493fc59ebb25de0df3f09dd
 _md5_=73304a1404ed3e3b66ccd621d32cd6db
diff --git a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1 b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
index f74e2f4d2135..6e18fb376f4a 100644
--- a/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
+++ b/metadata/md5-cache/sci-biology/mothur-1.27.0-r1
@@ -11,5 +11,5 @@ LICENSE=GPL-3
 RDEPEND=sci-biology/uchime mpi? ( virtual/mpi ) virtual/fortran
 SLOT=0
 SRC_URI=https://www.mothur.org/w/images/c/cb/Mothur.1.27.0.zip -> mothur-1.27.0.zip
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	fortran-2	7e39eb204d37699d5f1eaf9f4d61888a
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	fortran-2	7e39eb204d37699d5f1eaf9f4d61888a
 _md5_=2a931ea6d0536a0cb3441d235f5d2d6b
diff --git a/metadata/md5-cache/sci-biology/mummer-3.23 b/metadata/md5-cache/sci-biology/mummer-3.23
index 25f9a4f7153f..8e95f0dbb96d 100644
--- a/metadata/md5-cache/sci-biology/mummer-3.23
+++ b/metadata/md5-cache/sci-biology/mummer-3.23
@@ -9,5 +9,5 @@ LICENSE=Artistic
 RDEPEND=app-shells/tcsh dev-lang/perl
 SLOT=0
 SRC_URI=mirror://sourceforge/mummer/MUMmer3.23.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=c256f298b416306c1be7005e7877f7b9
diff --git a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1 b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
index 86785db5ef2f..c853a35cdc58 100644
--- a/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
+++ b/metadata/md5-cache/sci-biology/newick-utils-1.6-r1
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure install prepare
 DEPEND=xml? ( dev-libs/libxml2 )
 DESCRIPTION=Tools for processing phylogenetic trees
@@ -11,5 +11,5 @@ LICENSE=BSD
 RDEPEND=xml? ( dev-libs/libxml2 ) !dev-games/libnw
 SLOT=0
 SRC_URI=http://cegg.unige.ch/pub/newick-utils-1.6.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e
 _md5_=fac40fe86b457a75883a5eb465ce18d8
diff --git a/metadata/md5-cache/sci-biology/phylip-3.698 b/metadata/md5-cache/sci-biology/phylip-3.698
index 2025c273345d..7000a1a41920 100644
--- a/metadata/md5-cache/sci-biology/phylip-3.698
+++ b/metadata/md5-cache/sci-biology/phylip-3.698
@@ -10,5 +10,5 @@ LICENSE=BSD-2
 RDEPEND=x11-libs/libXaw !dev-lang/elixir
 SLOT=0
 SRC_URI=http://evolution.gs.washington.edu/phylip/download/phylip-3.698.zip
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=b3a777c086ea4a6cd489efcb5bde7b66
diff --git a/metadata/md5-cache/sci-biology/raxml-7.2.6 b/metadata/md5-cache/sci-biology/raxml-7.2.6
index b8242bc7a83a..8ddce0b19819 100644
--- a/metadata/md5-cache/sci-biology/raxml-7.2.6
+++ b/metadata/md5-cache/sci-biology/raxml-7.2.6
@@ -9,5 +9,5 @@ LICENSE=GPL-2
 REQUIRED_USE=cpu_flags_x86_sse3
 SLOT=0
 SRC_URI=http://wwwkramer.in.tum.de/exelixis/software/RAxML-7.2.6.tar.bz2
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=14b77d8b019468c10a65f1358be0d8ae
diff --git a/metadata/md5-cache/sci-biology/rmblast-1.2-r1 b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
index 80f7ee9b1a5a..d0c9ce8dcdd1 100644
--- a/metadata/md5-cache/sci-biology/rmblast-1.2-r1
+++ b/metadata/md5-cache/sci-biology/rmblast-1.2-r1
@@ -9,5 +9,5 @@ LICENSE=OSL-2.1
 RDEPEND=dev-libs/boost
 SLOT=0
 SRC_URI=http://www.repeatmasker.org/rmblast-1.2-ncbi-blast-2.2.23+-src.tar.gz https://dev.gentoo.org/~mgorny/dist/rmblast-1.2-gcc47.patch.bz2
-_eclasses_=estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=2f7831c50cdca352d9a7b340a8bee159
diff --git a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1 b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
index 06ba23571b33..3708fbda5da2 100644
--- a/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
+++ b/metadata/md5-cache/sci-biology/seqan-2.4.0-r1
@@ -12,5 +12,5 @@ RDEPEND=app-arch/bzip2:= sys-libs/zlib !!sci-biology/seqan:2.0 !!sci-biology/seq
 REQUIRED_USE=cpu_flags_x86_sse4_1
 SLOT=0
 SRC_URI=https://github.com/seqan/seqan/archive/seqan-v2.4.0.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6	multibuild	d79bd5b4bc4edcb1f5bc19591f8d4714
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6	multibuild	d79bd5b4bc4edcb1f5bc19591f8d4714
 _md5_=8796fa7c1594d16d8a9b96920de5cf2b
diff --git a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3 b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
index 858b028987af..6d86b291d7e8 100644
--- a/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
+++ b/metadata/md5-cache/sci-biology/treeviewx-0.5.1-r3
@@ -1,4 +1,4 @@
-BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+BDEPEND=sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DEFINED_PHASES=configure prepare
 DEPEND=x11-libs/wxGTK:3.0[X]
 DESCRIPTION=A phylogenetic tree viewer
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=x11-libs/wxGTK:3.0[X]
 SLOT=0
 SRC_URI=http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/download/0.5/tv-0.5.1.tar.gz
-_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	wxwidgets	7e8a20d3bacea0e3ecf6e96fb72180aa
+_eclasses_=gnuconfig	262062cef0ba4f22b397193da514a350	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	wxwidgets	7e8a20d3bacea0e3ecf6e96fb72180aa
 _md5_=14493f936bb599dd7faec748cece70f3
diff --git a/metadata/md5-cache/sci-biology/uchime-4.2.40 b/metadata/md5-cache/sci-biology/uchime-4.2.40
index 44cc8502ece7..b97594b549dc 100644
--- a/metadata/md5-cache/sci-biology/uchime-4.2.40
+++ b/metadata/md5-cache/sci-biology/uchime-4.2.40
@@ -8,5 +8,5 @@ KEYWORDS=amd64 x86 ~amd64-linux ~x86-linux
 LICENSE=public-domain
 SLOT=0
 SRC_URI=https://www.drive5.com/uchime/uchime4.2.40_src.tar.gz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	multiprocessing	61c959fc55c15c00bbb1079d6a71370b	ninja-utils	a4dab848a4490e8e48cf0baab3e61bc2	xdg-utils	4f29a8b760a594a212abe9c2ba957c31	cmake	11fee991ab428a3370e5c20fa8231fb6
 _md5_=421c75fd545cd9d38575321e00aeab36
diff --git a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1 b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
index 513f6cc4c9aa..bafdf4bf4598 100644
--- a/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
+++ b/metadata/md5-cache/sci-biology/ucsc-genome-browser-260-r1
@@ -11,5 +11,5 @@ RDEPEND=dev-libs/openssl:0= media-libs/libpng:0= !<sci-biology/ucsc-genome-brows
 REQUIRED_USE=server? ( mysql )
 SLOT=0
 SRC_URI=http://hgdownload.cse.ucsc.edu/admin/jksrc.v260.zip
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14	webapp	60f2eb31dec733d05e8114cc078ebc33
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	webapp	60f2eb31dec733d05e8114cc078ebc33
 _md5_=35cb93e40ad2d78c190e860dd3944557
diff --git a/metadata/md5-cache/sci-biology/unafold-3.8-r1 b/metadata/md5-cache/sci-biology/unafold-3.8-r1
index 2b0a9c0a0dd0..a011a87c0062 100644
--- a/metadata/md5-cache/sci-biology/unafold-3.8-r1
+++ b/metadata/md5-cache/sci-biology/unafold-3.8-r1
@@ -10,5 +10,5 @@ LICENSE=unafold
 RDEPEND=media-libs/freeglut media-libs/gd virtual/opengl
 SLOT=0
 SRC_URI=http://dinamelt.bioinfo.rpi.edu/download/unafold-3.8.tar.bz2
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	edos2unix	33e347e171066657f91f8b0c72ec8773	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=140380fdaf468f37ce9bb27d0026ec8e
diff --git a/metadata/md5-cache/sci-biology/vcftools-0.1.14 b/metadata/md5-cache/sci-biology/vcftools-0.1.14
index 7e9339595360..03216142b60a 100644
--- a/metadata/md5-cache/sci-biology/vcftools-0.1.14
+++ b/metadata/md5-cache/sci-biology/vcftools-0.1.14
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack ) virtual/pkgconfig sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Tools for working with VCF (Variant Call Format) files
 EAPI=6
 HOMEPAGE=http://vcftools.sourceforge.net/
@@ -10,5 +10,5 @@ LICENSE=LGPL-3
 RDEPEND=sys-libs/zlib dev-lang/perl:= lapack? ( virtual/lapack )
 SLOT=0
 SRC_URI=https://github.com/vcftools/vcftools/releases/download/v0.1.14/vcftools-0.1.14.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf	flag-o-matic	d5e1306543bc457213f68bb18f830d14	perl-functions	fea344a91ebf37efadf172c6a3de5a72
+_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	6cc26735fa9dd59e8c62880beda05b6e	flag-o-matic	a500d7cc40da3de38c361e889153bdf7	perl-functions	fea344a91ebf37efadf172c6a3de5a72
 _md5_=82adffd84f2a93745e683b498b79fbe8
diff --git a/metadata/md5-cache/sci-biology/velvet-1.2.10 b/metadata/md5-cache/sci-biology/velvet-1.2.10
index 26399b25b456..af3812b695fb 100644
--- a/metadata/md5-cache/sci-biology/velvet-1.2.10
+++ b/metadata/md5-cache/sci-biology/velvet-1.2.10
@@ -9,5 +9,5 @@ KEYWORDS=~amd64 ~x86
 LICENSE=GPL-2
 SLOT=0
 SRC_URI=https://www.ebi.ac.uk/~zerbino/velvet/velvet_1.2.10.tgz
-_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	flag-o-matic	d5e1306543bc457213f68bb18f830d14
+_eclasses_=toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	flag-o-matic	a500d7cc40da3de38c361e889153bdf7
 _md5_=f48eb0348a1ac91d41dde22d3ced2ea1
diff --git a/metadata/md5-cache/sci-biology/yass-1.14-r2 b/metadata/md5-cache/sci-biology/yass-1.14-r2
index cf0993408e55..f015a1728f38 100644
--- a/metadata/md5-cache/sci-biology/yass-1.14-r2
+++ b/metadata/md5-cache/sci-biology/yass-1.14-r2
@@ -1,5 +1,5 @@
 DEFINED_PHASES=configure prepare
-DEPEND=dmalloc? ( dev-libs/dmalloc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.2-r1:1.16 ) >=sys-devel/autoconf-2.69 >=sys-devel/libtool-2.4
+DEPEND=dmalloc? ( dev-libs/dmalloc ) sys-devel/gnuconfig >=app-portage/elt-patches-20170815 || ( >=sys-devel/automake-1.16.4:1.16 ) >=sys-devel/autoconf-2.71 >=sys-devel/libtool-2.4
 DESCRIPTION=Genomic similarity search with multiple transition constrained spaced seeds
 EAPI=6
 HOMEPAGE=http://bioinfo.lifl.fr/yass/
@@ -10,5 +10,5 @@ LICENSE=GPL-2
 RDEPEND=dmalloc? ( dev-libs/dmalloc )
 SLOT=0
 SRC_URI=http://bioinfo.lifl.fr/yass/files/yass-1.14.tar.gz
-_eclasses_=desktop	c0d27bf73aa08ca05b663dbd31fbef28	edos2unix	33e347e171066657f91f8b0c72ec8773	estack	055c42df72f76a4f45ec92b35e83cd56	epatch	9f813bb3c47cf2e60619a663b87c5f4e	toolchain-funcs	badd6e329e1f3e6bee99b35bf8763ce8	multilib	de4beb52bfa93c4c5d96792a6b5e1784	ltprune	4f3f2db5ce3ccbeeacdf3f94954043aa	preserve-libs	dbc9f8d2d49c66467bc327fddd8317bd	strip-linguas	ac3ee41ee2d31d8c41a77c0838320cc7	vcs-clean	b690a7e9b6c497cf59326a7545df4283	wrapper	4251d4c84c25f59094fd557e0063a974	eutils	dab5d8ec471d025b79c9e6906bcf3bff	gnuconfig	262062cef0ba4f22b397193da514a350	libtool	241a8f577b9781a42a7421e53448a44e	autotools	c9df06c186913b43eb211100ef5fe2cf
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 _md5_=3a4ba9b4e7b8efec51cfc79d261fefd3