diff options
Diffstat (limited to 'app-sci')
| -rw-r--r-- | app-sci/seaview/ChangeLog | 11 | ||||
| -rw-r--r-- | app-sci/seaview/Manifest | 5 | ||||
| -rw-r--r-- | app-sci/seaview/files/29seaview | 1 | ||||
| -rw-r--r-- | app-sci/seaview/files/digest-seaview-1 | 1 | ||||
| -rw-r--r-- | app-sci/seaview/metadata.xml | 12 | ||||
| -rw-r--r-- | app-sci/seaview/seaview-1.ebuild | 38 |
6 files changed, 68 insertions, 0 deletions
diff --git a/app-sci/seaview/ChangeLog b/app-sci/seaview/ChangeLog new file mode 100644 index 000000000000..bd2f9458d777 --- /dev/null +++ b/app-sci/seaview/ChangeLog @@ -0,0 +1,11 @@ +# ChangeLog for app-sci/seaview +# Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/seaview/ChangeLog,v 1.1 2004/06/23 17:13:35 ribosome Exp $ + +*seaview-1 (23 Jun 2004) + + 23 Jun 2004; Olivier Fisette <ribosome@gentoo.org> + seaview-1.ebuild, metadata.xml, files/29seaview : + Initial import. Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>. + Reference: Gentoo Bugzilla, bug #54055 + diff --git a/app-sci/seaview/Manifest b/app-sci/seaview/Manifest new file mode 100644 index 000000000000..4f4e049b954e --- /dev/null +++ b/app-sci/seaview/Manifest @@ -0,0 +1,5 @@ +MD5 9f81073a482bdcd0b5a244ec6fe21191 seaview-1.ebuild 974 +MD5 be83a7b8f01fb2fedcdcf2d65d9abb5a ChangeLog 464 +MD5 87761ffd9aff940d568d2c7b9b189ad9 metadata.xml 517 +MD5 81acca7fe3c919d7be4ef27307d9ce7d files/29seaview 26 +MD5 ee3d2374f6b28744f1b282577c0dcb38 files/digest-seaview-1 56 diff --git a/app-sci/seaview/files/29seaview b/app-sci/seaview/files/29seaview new file mode 100644 index 000000000000..64f2831dcaee --- /dev/null +++ b/app-sci/seaview/files/29seaview @@ -0,0 +1 @@ +PATH="/usr/share/seaview" diff --git a/app-sci/seaview/files/digest-seaview-1 b/app-sci/seaview/files/digest-seaview-1 new file mode 100644 index 000000000000..1b50df5638af --- /dev/null +++ b/app-sci/seaview/files/digest-seaview-1 @@ -0,0 +1 @@ +MD5 48db16486992fed35dad053fed0734e0 seaview.tar 560640 diff --git a/app-sci/seaview/metadata.xml b/app-sci/seaview/metadata.xml new file mode 100644 index 000000000000..7fe8480d1f2d --- /dev/null +++ b/app-sci/seaview/metadata.xml @@ -0,0 +1,12 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci</herd> + <longdescription> + SeaView is a graphical multiple sequence alignment editor developped by + Manolo Gouy. SeaView is able to read and write various alignment + formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to + manually edit the alignment, and also to run DOT-PLOT or CLUSTALW + programs to locally improve the alignment. + </longdescription> +</pkgmetadata> diff --git a/app-sci/seaview/seaview-1.ebuild b/app-sci/seaview/seaview-1.ebuild new file mode 100644 index 000000000000..4c36abf4926d --- /dev/null +++ b/app-sci/seaview/seaview-1.ebuild @@ -0,0 +1,38 @@ +# Copyright 1999-2004 Gentoo Technologies, Inc. +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/app-sci/seaview/seaview-1.ebuild,v 1.1 2004/06/23 17:13:35 ribosome Exp $ + +DESCRIPTION="A graphical multiple sequence alignment editor" +HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html" +SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/seaview.tar" +LICENSE="public-domain" + +SLOT="0" +KEYWORDS="~x86" +IUSE="clustalw" + +DEPEND="x11-libs/fltk" + +RDEPEND="${DEPEND} + clustalw? app-sci/clustalw" + +S=${WORKDIR} + +src_compile() { + # Corrects location of libfltk. + CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1" + sed -ie 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile + + emake -e || die +} + +src_install() { + dobin seaview + use clustalw && dobin seaview_align.sh + insinto /usr/share/${PN} + doins protein.mase seaview.help + + # Sets the path for the package's help file. + insinto /etc/env.d + doins ${FILESDIR}/29seaview +} |