Initial import for package app-sci/seaview

6 files changed, 68 insertions, 0 deletions

diff --git a/app-sci/seaview/ChangeLog b/app-sci/seaview/ChangeLog
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+++ b/app-sci/seaview/ChangeLog
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+# ChangeLog for app-sci/seaview
+# Copyright 2000-2004 Gentoo Technologies, Inc.; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/seaview/ChangeLog,v 1.1 2004/06/23 17:13:35 ribosome Exp $
+
+*seaview-1 (23 Jun 2004)
+
+  23 Jun 2004; Olivier Fisette <ribosome@gentoo.org>
+  seaview-1.ebuild, metadata.xml, files/29seaview :
+  Initial import.  Ebuild submitted by Olivier Fisette <ribosome@gentoo.org>.
+  Reference: Gentoo Bugzilla, bug #54055
+
diff --git a/app-sci/seaview/Manifest b/app-sci/seaview/Manifest
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index 000000000000..4f4e049b954e
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+++ b/app-sci/seaview/Manifest
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+MD5 9f81073a482bdcd0b5a244ec6fe21191 seaview-1.ebuild 974
+MD5 be83a7b8f01fb2fedcdcf2d65d9abb5a ChangeLog 464
+MD5 87761ffd9aff940d568d2c7b9b189ad9 metadata.xml 517
+MD5 81acca7fe3c919d7be4ef27307d9ce7d files/29seaview 26
+MD5 ee3d2374f6b28744f1b282577c0dcb38 files/digest-seaview-1 56
diff --git a/app-sci/seaview/files/29seaview b/app-sci/seaview/files/29seaview
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index 000000000000..64f2831dcaee
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+++ b/app-sci/seaview/files/29seaview
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+PATH="/usr/share/seaview"
diff --git a/app-sci/seaview/files/digest-seaview-1 b/app-sci/seaview/files/digest-seaview-1
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index 000000000000..1b50df5638af
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+++ b/app-sci/seaview/files/digest-seaview-1
@@ -0,0 +1 @@
+MD5 48db16486992fed35dad053fed0734e0 seaview.tar 560640
diff --git a/app-sci/seaview/metadata.xml b/app-sci/seaview/metadata.xml
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index 000000000000..7fe8480d1f2d
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+++ b/app-sci/seaview/metadata.xml
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+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+	<herd>sci</herd>
+	<longdescription>
+		SeaView is a graphical multiple sequence alignment editor developped by
+		Manolo Gouy. SeaView is able to read and write various alignment
+		formats (NEXUS, MSF, CLUSTAL, FASTA, PHYLIP, MASE). It allows to
+		manually edit the alignment, and also to run DOT-PLOT or CLUSTALW
+		programs to locally improve the alignment.
+	</longdescription>
+</pkgmetadata>
diff --git a/app-sci/seaview/seaview-1.ebuild b/app-sci/seaview/seaview-1.ebuild
new file mode 100644
index 000000000000..4c36abf4926d
--- /dev/null
+++ b/app-sci/seaview/seaview-1.ebuild
@@ -0,0 +1,38 @@
+# Copyright 1999-2004 Gentoo Technologies, Inc.
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/app-sci/seaview/seaview-1.ebuild,v 1.1 2004/06/23 17:13:35 ribosome Exp $
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/seaview.tar"
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86"
+IUSE="clustalw"
+
+DEPEND="x11-libs/fltk"
+
+RDEPEND="${DEPEND}
+	clustalw? app-sci/clustalw"
+
+S=${WORKDIR}
+
+src_compile() {
+	# Corrects location of libfltk.
+	CFLAGS="${CFLAGS} -c -I/usr/include/fltk-1.1"
+	sed -ie 's:-L$(FLTK)/lib:-L/usr/lib/fltk-1.1:' Makefile
+
+	emake -e || die
+}
+
+src_install() {
+	dobin seaview
+	use clustalw && dobin seaview_align.sh
+	insinto /usr/share/${PN}
+	doins protein.mase seaview.help
+
+	# Sets the path for the package's help file.
+	insinto /etc/env.d
+	doins ${FILESDIR}/29seaview
+}