sys-cluster/openmpi: bump 1.8.8

Package-Manager: portage-2.2.20/cvs/Linux x86_64
Manifest-Sign-Key: 0x4D7043C9

3 files changed, 195 insertions, 9 deletions

diff --git a/sys-cluster/openmpi/ChangeLog b/sys-cluster/openmpi/ChangeLog
index 84a4252703ab..d7791997a89e 100644
--- a/sys-cluster/openmpi/ChangeLog
+++ b/sys-cluster/openmpi/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sys-cluster/openmpi
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/ChangeLog,v 1.143 2015/08/03 10:15:13 monsieurp Exp $
+# $Header: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/ChangeLog,v 1.144 2015/08/06 19:30:14 jsbronder Exp $
+
+*openmpi-1.8.8 (06 Aug 2015)
+
+  06 Aug 2015; Justin Bronder <jsbronder@gentoo.org> +openmpi-1.8.8.ebuild:
+  bump 1.8.8
 
   03 Aug 2015; Patrice Clement <monsieurp@gentoo.org> openmpi-1.8.7-r1.ebuild:
   Disable java by default.
diff --git a/sys-cluster/openmpi/Manifest b/sys-cluster/openmpi/Manifest
index 398f045410f9..0e97b3463e98 100644
--- a/sys-cluster/openmpi/Manifest
+++ b/sys-cluster/openmpi/Manifest
@@ -12,22 +12,20 @@ DIST openmpi-1.6.5.tar.bz2 10943881 SHA256 fe37bab89b5ef234e0ac82dc798282c2ab089
 DIST openmpi-1.7.5.tar.bz2 13286694 SHA256 cb3eef6880537d341d5d098511d390ec853716a6ec94007c03a0d1491b2ac8f2 SHA512 72de2788fa26615a2e7373b5f32e0a2b9e39d56094c45b49348ef19bbb0ea306734b7d3275d76471a18628b5244d882de4ed3595eb46f13683e1c8d2b277f065 WHIRLPOOL 107edd2eeca6e0ce9a9fb9ea1cd920cb1a87e8434390f2ed93279734c61bed63e9942bf2d33081e992d4d892f77a8643abbb58194aa76f7148d8716f1648aa82
 DIST openmpi-1.8.4.tar.bz2 13488749 SHA256 23158d916e92c80e2924016b746a93913ba7fae9fff51bf68d5c2a0ae39a2f8a SHA512 d4c8ce2bd3359cf2e85958b58ba18b52c9cef6676718eb3d948309b164b2f54544f8f8419ef6881c7a51ba268a876cd56e9b2d340a106a16fa25fb9fc3e4eff9 WHIRLPOOL 793f64ad44c2e3451a269bcb53d747d15a01649978d80f13599596e1bdd6a6011b50fdd60222bbe3a4ebe567a4785b2660e3c1eb09bdba77420581a0062480a2
 DIST openmpi-1.8.7.tar.bz2 13228742 SHA256 da629e9bd820a379cfafe15f842ee9b628d7451856085ccc23ee75ab3e1b48c7 SHA512 953e007b00c9753bafc05d13e6f686c9aa47f76f55fcc4eda565174d410de059e07862b7e667d15df13afb80418661d9a8d5ee17fdcc211d3e044992cd9ceede WHIRLPOOL 374edbca97262217dfe405414deff2f6a3cacc06daec56e3356ea76f27804ef3caa3f37050dc8a81f257b83c1ced49fd5f66647c2cba4892fbe4ec9746a6f84e
+DIST openmpi-1.8.8.tar.bz2 13231433 SHA256 a28382d1e6a36f4073412dc00836ff2524e42b674da9caf6ca7377baad790b94 SHA512 8ca2e3ebb9d9ba0f33faba9bef76fe95293721b73619cbc18176611074a56c277e9ab6cae7fa6c87ace11f16151c1bc495b2a8dbc8ad064d5a8f89f5d431a660 WHIRLPOOL e36186452978ba7a368c83b84b8b089f6995450fa866b7b8300d32eec7e64a816abf5f301dc716bf25b3b45b987489952ffc4b7057f4407677f2a2df5ee67cdd
 EBUILD openmpi-1.4.3.ebuild 2687 SHA256 9365fb61ca5888953cc61602d0862489ca50c281395b06c106368c7e14ce0cf8 SHA512 2753f9ba436791cee692e856d4c7d92ac5445230af158b594f08995e61a43b90cbb09625a9374e720890b158d06fb13bc198fb9c0c72de93b7a05fe569a74cc1 WHIRLPOOL efba39e8ed2b252acfe2e573904e3f0490f65f7f2746f7c2eed6d50860321c70a7d55288d146a36536f78b8ecf0f647d9dbb3120b96c67ad5368a38ca130bccd
 EBUILD openmpi-1.4.5.ebuild 2698 SHA256 4326f9fe35dabb5ed4c15a35edb7389c3a35d12d99bf163ad02aea7c6ce4ce08 SHA512 e81ca3a6e76d448c8ed22dc1de36e11275b2860e0bb7698ca65b4f4fefdc82421b34b0bfb838b73fa273a27acc5a77d7e7c6a4b63257fda6695e213e10f0b2c0 WHIRLPOOL 09e5b23f727a22b6a2a6b3885d5f56a123b1f2c2572966438f52b1f5189b59f89c5d0533ebd9ce61e9d66fc6331477f780171f86ef9727c78bd279c7b5754950
 EBUILD openmpi-1.6.5-r1.ebuild 5431 SHA256 575ea177af8bee17b60931ccc6844d4c848bac21e2f03a43e8ed40b427fee9a8 SHA512 d17724df93b14168330d0cc0e7ce8c50a306a7ce295efc11234c8c2db0e5f6187bb3ca4161be183d5487475ca134d9d1c39524ccad5bb0f336fec789c1325878 WHIRLPOOL a0548e15d30aeb97cfc81a180c4eeb1623317ad6bff78c6b1677829364761c44d26aa937782579241b2af17f7ff98510ddfeac8301fb624e64a49c5dc61be574
 EBUILD openmpi-1.7.5-r1.ebuild 5122 SHA256 a010918511cf9145a75bfcddea09924b40a9ed8c2b9919bc88a5640542fbe985 SHA512 288e111c5731b9bd0576dc4aad6aba71946541d808405cbfb9140ba9e5bf25140a025e5a13ce2cdbec4695e38ebe7fc20754959f1ff241d1b5804d826bbe8d38 WHIRLPOOL ea6c1dfc5843b008a8eb18e21e015c88b044286a5ec43bf88a59fa8cfd45dc4f5c0fe90daad753a88c779809b0f2481715c61cceb3f10bb2dd5a43d619f88245
 EBUILD openmpi-1.8.4-r4.ebuild 5156 SHA256 e2a8c899210a5459d66101a871f422370a204d44e99a81152c7e1a2d8b2484b7 SHA512 15daa5afc9f6366c94a842bd2fc4ce4fe83b18e53e16f6cfd0d4a96dd0e818d67f5e346521ecc01303dd0fcbc5c0c22111d73070a65c6aca600eea492e0f7a51 WHIRLPOOL 1b01140ca7d9570bfde6231e9d17208572b46174b419404477349e9f3038336a9abd4d91d8bf4c32c6aa025bf0c76eb61fa4a5b629a7fc44883110b65c5b4461
 EBUILD openmpi-1.8.7-r1.ebuild 5664 SHA256 7d0ee1a56c14636264b1df2a0399c1e2a748bf5170266fe9a373697e2075330d SHA512 9742e52eef8171b488851f424d7f0dac7a347a5dc894a0d6e9c7fa913a1b9139f7fa0a28b9fd3407fb93e6e072159e3b355fd5e76a398cca644ec7f1b6f11ad0 WHIRLPOOL 5c278034078a35dc3be854ea443cd4cf585537c95ccb333310ba5201c251dcb8a3a338f27c27a4efad272f6232eb116ed1ead3af1b06f8f44808d574f3a71a55
-MISC ChangeLog 22485 SHA256 dfc1beebdd88d17074feab8872bb673d9d0cad9cc5421699d97b81eb676cfb18 SHA512 60967a259602e2efabdf2f4e77658955e11b5026b012bc7dc5e48341f76f1c784530d015797fce4196ed930df8206cb998d61c5eebe4966471f296b815ab617f WHIRLPOOL 69bc144bf9239073e5c52d86a0f0be262e2e97950761e71d39e4a09db53b3d40fae7bc08cc3de52517caeafd9ad4a6b64308a0ee78d0d80f6a249fd98391e39f
+EBUILD openmpi-1.8.8.ebuild 5667 SHA256 74afbaede6ad16fe1aa6dc093a668e639a9aaa423cd7ef694ca889bb484885ef SHA512 4497d9569e8ebbbb6db92707ee03134ef15500b0c02049653e10f30ebb536e3914b703d2eb77ee1ef94047184dc6814a5a109c3b2e1e6c86330b2e2a6a70280b WHIRLPOOL 083aec04a3dcbd04184e75199742216b213487b227579f032c2f5f44c07b19deb2899bb3b5f6e610c14d8036d2c8bea7fa7ad066753d962d32f6b581983ed0b0
+MISC ChangeLog 22605 SHA256 98728cdd98b01ef2bfddb2ab3e29c3593f561957385158cecff415a6ed440e9b SHA512 bdaec10229fb19b70c9c3bf601e40cc2d8796889b640a158a49e8db7304f1709c1532a22357ee78969bd5e96d0bba887fb56e9f5a3594d6e2d83eb56149a9277 WHIRLPOOL bfa30e308a856dd5673f69e053ce3608c6f64f3e0307a88f8764df98fcdad3921dc703806ccc47dcf3001645a989de32a5499dbf7369ae39171f62b833baa715
 MISC metadata.xml 791 SHA256 9edc79c0dc5999563fa3840cbba64de2b7061b7aa15fb62b7525944578f0b270 SHA512 0ec140f99b9ece69950b5d9cd283a097b3e4d6962b4c7941343b0eea1a914edf53b9ddfeb8bc2a8cc920219cf8e674b07370a0446136b1f9b416614acbcb97f6 WHIRLPOOL 761b3e76edadd1b7066937c3c9b93ae09c3c224dbf4b1da3771a218d54b92354e86adfa8dc945da049206f1e9b885653a12fd19342a7966ed3458a89df7f54ba
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diff --git a/sys-cluster/openmpi/openmpi-1.8.8.ebuild b/sys-cluster/openmpi/openmpi-1.8.8.ebuild
new file mode 100644
index 000000000000..b64c1842cf93
--- /dev/null
+++ b/sys-cluster/openmpi/openmpi-1.8.8.ebuild
@@ -0,0 +1,183 @@
+# Copyright 1999-2015 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sys-cluster/openmpi/openmpi-1.8.8.ebuild,v 1.1 2015/08/06 19:30:14 jsbronder Exp $
+
+EAPI=5
+
+FORTRAN_NEEDED=fortran
+
+inherit cuda eutils flag-o-matic fortran-2 java-pkg-opt-2 multilib toolchain-funcs versionator
+
+MY_P=${P/-mpi}
+S=${WORKDIR}/${MY_P}
+
+IUSE_OPENMPI_FABRICS="
+	openmpi_fabrics_ofed
+	openmpi_fabrics_knem
+	openmpi_fabrics_open-mx
+	openmpi_fabrics_psm"
+
+IUSE_OPENMPI_RM="
+	openmpi_rm_pbs
+	openmpi_rm_slurm"
+
+IUSE_OPENMPI_OFED_FEATURES="
+	openmpi_ofed_features_control-hdr-padding
+	openmpi_ofed_features_connectx-xrc
+	openmpi_ofed_features_udcm
+	openmpi_ofed_features_rdmacm
+	openmpi_ofed_features_dynamic-sl
+	openmpi_ofed_features_failover"
+
+DESCRIPTION="A high-performance message passing library (MPI)"
+HOMEPAGE="http://www.open-mpi.org"
+SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2"
+LICENSE="BSD"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~ppc64 ~x86 ~amd64-fbsd ~x86-fbsd ~amd64-linux"
+IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt
+	${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}"
+
+REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs )
+	openmpi_rm_pbs? ( !openmpi_rm_slurm )
+	openmpi_fabrics_psm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )
+	openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )"
+
+MPI_UNCLASSED_DEP_STR="
+	vt? (
+		!dev-libs/libotf
+		!app-text/lcdf-typetools
+	)"
+
+CDEPEND="
+	!sys-cluster/mpich
+	!sys-cluster/mpich2
+	!sys-cluster/mpiexec
+	dev-libs/libevent
+	dev-libs/libltdl:0
+	>=sys-apps/hwloc-1.9.1[numa?]
+	sys-libs/zlib
+	cuda? ( dev-util/nvidia-cuda-toolkit )
+	elibc_FreeBSD? ( dev-libs/libexecinfo )
+	openmpi_fabrics_ofed? ( sys-infiniband/ofed:* )
+	openmpi_fabrics_knem? ( sys-cluster/knem )
+	openmpi_fabrics_open-mx? ( sys-cluster/open-mx )
+	openmpi_fabrics_psm? ( sys-infiniband/infinipath-psm:* )
+	openmpi_rm_pbs? ( sys-cluster/torque )
+	openmpi_rm_slurm? ( sys-cluster/slurm )
+	openmpi_ofed_features_rdmacm? ( sys-infiniband/librdmacm:* )"
+
+RDEPEND="${CDEPEND}
+	java? ( >=virtual/jre-1.6 )"
+
+DEPEND="${CDEPEND}
+	java? ( >=virtual/jdk-1.6 )"
+
+pkg_setup() {
+	fortran-2_pkg_setup
+	java-pkg-opt-2_pkg_setup
+
+	if use mpi-threads; then
+		echo
+		ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by"
+		ewarn "default and officially unsupported by upstream."
+		ewarn "You may stop now and set USE=-mpi-threads"
+		echo
+	fi
+
+	echo
+	elog "OpenMPI has an overwhelming count of configuration options."
+	elog "Don't forget the EXTRA_ECONF environment variable can let you"
+	elog "specify configure options if you find them necessary."
+	echo
+}
+
+src_prepare() {
+	# Necessary for scalibility, see
+	# http://www.open-mpi.org/community/lists/users/2008/09/6514.php
+	if use threads; then
+		echo 'oob_tcp_listen_mode = listen_thread' \
+			>> opal/etc/openmpi-mca-params.conf
+	fi
+}
+
+src_configure() {
+	local myconf=(
+		--sysconfdir="${EPREFIX}/etc/${PN}"
+		--enable-pretty-print-stacktrace
+		--enable-orterun-prefix-by-default
+		--with-hwloc="${EPREFIX}/usr"
+		--with-libltdl="${EPREFIX}/usr"
+		)
+
+	if use fortran; then
+		myconf+=(--enable-mpi-fortran=all)
+	else
+		myconf+=(--enable-mpi-fortran=no)
+	fi
+
+	if use java; then
+		# We must always build with the right -source and -target
+		# flags. Passing flags to javac isn't explicitly supported here
+		# but we can cheat by overriding the configure test for javac.
+		export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)"
+	fi
+
+	! use vt && myconf+=(--enable-contrib-no-build=vt)
+
+	econf "${myconf[@]}" \
+		$(use_enable cxx mpi-cxx) \
+		$(use_with cma) \
+		$(use_with cuda cuda "${EPREFIX}"/opt/cuda) \
+		$(use_enable romio io-romio) \
+		$(use_enable heterogeneous) \
+		$(use_enable ipv6) \
+		$(use_enable mpi-threads mpi-thread-multiple) \
+		$(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \
+		$(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \
+		$(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \
+		$(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \
+		$(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \
+		$(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \
+		$(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \
+		$(use_enable openmpi_ofed_features_udcm openib-udcm) \
+		$(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \
+		$(use_enable openmpi_ofed_features_failover btl-openib-failover) \
+		$(use_with openmpi_rm_pbs tm) \
+		$(use_with openmpi_rm_slurm slurm) \
+		$(use_enable java) \
+		$(use_enable java mpi-java)
+}
+
+src_install () {
+	emake DESTDIR="${D}" install
+
+	# From USE=vt see #359917
+	rm "${ED}"/usr/share/libtool &> /dev/null
+
+	# Avoid collisions with libevent
+	rm -rf "${ED}"/usr/include/event2 &> /dev/null
+
+	# Remove la files, no static libs are installed and we have pkg-config
+	find "${ED}"/usr/$(get_libdir)/ -type f -name '*.la' -delete
+
+	if use java; then
+		local mpi_jar="${ED}"/usr/$(get_libdir)/mpi.jar
+		java-pkg_dojar "${mpi_jar}"
+		# We don't want to install the jar file twice
+		# so let's clean after ourselves.
+		rm "${mpi_jar}" || die
+	fi
+
+	dodoc README AUTHORS NEWS VERSION || die
+}
+
+src_test() {
+	# Doesn't work with the default src_test as the dry run (-n) fails.
+	emake -j1 check
+}