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| author |   Justin Lecher <jlec@gentoo.org> | 2014-09-20 19:06:09 +0000 |
|---|---|---|
| committer | Justin Lecher <jlec@gentoo.org> | 2014-09-20 19:06:09 +0000 |
| commit | 07cc8858d291f6abc3eb2bee672dc3724767f326 (patch) | |
| tree | 3a053057b9338e7fb840afad22c64e853084162b /sci-libs | |
| parent | sci-libs/htslib: New addition, written by me (diff) | |
| download | historical-07cc8858d291f6abc3eb2bee672dc3724767f326.tar.gz historical-07cc8858d291f6abc3eb2bee672dc3724767f326.tar.bz2 historical-07cc8858d291f6abc3eb2bee672dc3724767f326.zip | |
sci-libs/htslib: New addition, written by me
Package-Manager: portage-2.2.13/cvs/Linux x86_64
Manifest-Sign-Key: 0xB9D4F231BD1558AB!
Diffstat (limited to 'sci-libs')
| -rw-r--r-- | sci-libs/htslib/Manifest | 26 | ||||
| -rw-r--r-- | sci-libs/htslib/htslib-1.0.ebuild | 35 | ||||
| -rw-r--r-- | sci-libs/htslib/metadata.xml | 5 |
3 files changed, 64 insertions, 2 deletions
diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest index 202990ad80ea..b82608dc0e2f 100644 --- a/sci-libs/htslib/Manifest +++ b/sci-libs/htslib/Manifest @@ -1,4 +1,26 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA512 + DIST htslib-1.0.tar.bz2 842174 SHA256 3d53fb081fafd930cadfee6f950faacc1993a0f4a9fa329fc897865fc6b331bc SHA512 aee7080a31c3fe5bd1fe4a16102da4aef7d415fd022781c1a5bdc1316ca50f8fcabbb95a39adc867e4eb5ac2d8ed63ab15ceafcd768e840d2593282916313507 WHIRLPOOL 512f4a95e98129151fef34fb90294138bc0aec40d5c2345d15d49ded02810c4663b8ff65726ced9f0d9ceb300295da066f6025d2b1966224937fc9ff58f2b58f -EBUILD htslib-1.0.ebuild 683 SHA256 4c18f49df4cec207f1a87c4441906bded31e46291ae2b0440c46af120b980139 SHA512 480b7ddc7d2f4d7fe3bbb7d25e94636c5e410c08c6f85fea039d9a185776067e64e6fc624b12ad9a8f78b15d8c3b169ffbddf486fbe0fe0d11c4d7cf3487183b WHIRLPOOL fb4647462aa17fe35e0b0fbfbd976c7bfa76d54430e595f7f2e6ac2d91747b61e143e1f3e4adabf9fb094ff11642b14d8bf38ffb0eb977e86fa43c6eec8d05a9 -MISC ChangeLog 258 SHA256 fe76daef45cceeaf799407b5035c6a14d78c796bb53451a545730db04850e5f8 SHA512 0e077a6de9a9978f55e0d4cdad92d02a61b972ca230c0148fc7c8d92d4ae653bae190cce297c3adc191307140146df06bd899d8f3c7559a2a447534a9a84e375 WHIRLPOOL 0e1dec941a84844e67e28bcd084ba7ef5a669daef93a380aaaf416fb73a8e417af4cd07d36b08c0a47d76834e83a14396c02e8fc0a0942e44a7dd5edeea530d9 +EBUILD htslib-1.0.ebuild 776 SHA256 890d5b6ab6990e5847c740e7b0fa9981bde8c49c6f14f23cd7cd434e0bc1d4c5 SHA512 473a131479fbe05ba51185b9be51f69d0c308457e06bab55eac9f36f5ad92cf1f90d84f765f51f704b0eaef25efb6fc03fb20e35ef151c68d9f3e2389ac570f8 WHIRLPOOL eb7118672c29d6047294e7b977daa787f3b8acd2a920ba5a7c867515cd7c65dd4fab62a1d7be2e6a4579e2385713d851f1af143f74e07a7f87b6895806077f0c +MISC ChangeLog 343 SHA256 161d812b6320dd542a86eda93453cc0e5f4b6844a83cb08ae0e6dc2a57b7a30d SHA512 8bb184eea65d5cfaa497bbd265bdb78a032a85449fb054cfd66686c0ab606a0503d28e05a7e78cd8533a3427c5bf8e21627d710d875ea1e483ddf8d9c4dd38ec WHIRLPOOL bc95db0798dcac5fd6e233d6fce7b9864943b8b22c6482dbcf6b487fcb8101dcf0a185ac3e1ec81e9b43ec70130e75b4864b57c461231938e8886f56d2c6af6a MISC metadata.xml 166 SHA256 29b228f683c71345323d841414e410c929a320f34536eb30910498728260c8ac SHA512 51c5345bb1c4466b73e2feac8895c64fc119365e7f2c156702f4c93664d3aba028b3da9daaabf24f61a88220345fca7806771a252e8ae906cac5dec97862c7e0 WHIRLPOOL 211bf955d94fc1d93b12388a2c597a8d440fb5d78f84d59b2549569537098c3525b1fbab707441d62fabe20edcac2fd9ebe09c5d9870f1c9558d7ee90d5db5b3 +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0 + +iQJ8BAEBCgBmBQJUHdAhXxSAAAAAAC4AKGlzc3Vlci1mcHJAbm90YXRpb25zLm9w +ZW5wZ3AuZmlmdGhob3JzZW1hbi5uZXQyQ0JDQjFGMzBDQ0UxMjFGNENDNDgxMDdC +OUQ0RjIzMUJEMTU1OEFCAAoJELnU8jG9FVirxUAP/3Wt2DAN/JvPJHCSMJHMkeFs +ONKk0BGf+JyrwEvs3HaFHHcTqOFDHVsQ6GynuU0P1ggpgHHS/Hln7sSVeS6RHd3R +VkvSp68JubiZTAdx11HpS3CBauVs92Wsf3gJ5H7XqxK7zsl+HOE/JG0peg/TdXyT +aKe8pMflBVGKZ/8EnlOcdVHeRRajq72Cl9HmMFSePF7aCs16ngZ3VpEYrxAnqcPa +tjTrB3C4zeqUmhAwQT0Iu+C2eG0z4uv34gl5lLXhyKDonI1LDgRVu+ovfzaGs2WU +9NwD7VMf5L6gQr9l+yIEtBV4oNCKQB5DpSygFsRllenywULTWUFefYUKKDPKHRhf +jNMaTWOhjISxFRwW6tQkOPjQCfP/a5/rBrDqSZ5zR7XX/KrPBMhW3YMFLPln/zO3 +bJ2ch7FZ1S6d6ALAX8GDwwbR387gJowD91E0cO2TDahqX9YSSgO1u3QwkwJluNh3 +miVqsiqD+ECjIDaPF02ehr8Swe8CiVWUi/9fTD7cvVWkX4Gq2VtGTI4HIZ1hWol8 +Che/tAJ2vFBm6/TCIQhPMlMIL3GDI0kSqQJR23EY5MdL4r5m9Iq5Yzn4lZFWDdKH +7PptIgX4PkpbH1QNa6+3u/2w/RHIpsuCXdNpXD9izc5sFiA8DUUsNT0/NfK64q7F +jRgQQHXFjBr1cEmHgXVC +=mviD +-----END PGP SIGNATURE----- diff --git a/sci-libs/htslib/htslib-1.0.ebuild b/sci-libs/htslib/htslib-1.0.ebuild new file mode 100644 index 000000000000..d0e5336b56b5 --- /dev/null +++ b/sci-libs/htslib/htslib-1.0.ebuild @@ -0,0 +1,35 @@ +# Copyright 1999-2014 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-libs/htslib/htslib-1.0.ebuild,v 1.1 2014/09/20 19:06:01 jlec Exp $ + +EAPI=5 + +inherit multilib toolchain-funcs + +DESCRIPTION="C library for high-throughput sequencing data formats" +HOMEPAGE="http://www.htslib.org/" +SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" + +SLOT="0" +LICENSE="MIT" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +src_compile() { + emake \ + AR="$(tc-getAR)" \ + CC="$(tc-getCC)" \ + CFLAGS="${CFLAGS}" \ + LDFLAGS="${LDFLAGS}" +} + +src_install() { + emake \ + prefix="${ED}"/usr \ + libdir="${ED}"/usr/$(get_libdir) \ + install + + rm "${ED}/usr/share/man/man1/libhts.so.1" || die + + dodoc README +} diff --git a/sci-libs/htslib/metadata.xml b/sci-libs/htslib/metadata.xml new file mode 100644 index 000000000000..f17a827e3101 --- /dev/null +++ b/sci-libs/htslib/metadata.xml @@ -0,0 +1,5 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <herd>sci-biology</herd> +</pkgmetadata> |