Bump.

Package-Manager: portage-2.1.1_rc1

4 files changed, 112 insertions, 5 deletions

diff --git a/sci-chemistry/coot/ChangeLog b/sci-chemistry/coot/ChangeLog
index 0ecb174ee127..44d340cbff3d 100644
--- a/sci-chemistry/coot/ChangeLog
+++ b/sci-chemistry/coot/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/coot
 # Copyright 1999-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.4 2006/08/05 05:08:18 dberkholz Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/ChangeLog,v 1.5 2006/09/06 21:59:58 dberkholz Exp $
+
+*coot-0.1.2 (06 Sep 2006)
+
+  06 Sep 2006; Donnie Berkholz <dberkholz@gentoo.org>; +coot-0.1.2.ebuild:
+  Bump.
 
   05 Aug 2006; Donnie Berkholz <dberkholz@gentoo.org>; metadata.xml:
   Remove myself as maintainer, anyone feel free to work on this, although I'll
diff --git a/sci-chemistry/coot/Manifest b/sci-chemistry/coot/Manifest
index 28938f49f88b..a1e4df907f4b 100644
--- a/sci-chemistry/coot/Manifest
+++ b/sci-chemistry/coot/Manifest
@@ -1,16 +1,24 @@
 DIST coot-0.1.2-pre-1.tar.gz 2759927 RMD160 e54818e72274288f125661e09e2a834f83230604 SHA1 94d5f4860b6d6d02e66dc69c0706fc8a7f170987 SHA256 32e370f7b55bdcfbb341fa6c631a9a485ce3e066ced96ddb27cbdc26d48d24cf
+DIST coot-0.1.2.tar.gz 2704638 RMD160 bb0ff46297fc7135b1bf31159bf41b18462b916c SHA1 66f4b13f37cab6537b454a0ad23050044eb4a95f SHA256 fcd2e5862ef57baffc19aa30b1bb48b5271baf0667cc72bf5ecd8a02911fe22a
+EBUILD coot-0.1.2.ebuild 2322 RMD160 c86ef0b0015d910d3b9c5ea13a96e2275e0c5564 SHA1 3752bf5759a97d9cc2e9d93cf53fbde703bf0e1f SHA256 54af37529d9971727335f104c61b577966a85aae514f5c7b3a3dcc1a741569b8
+MD5 f9bf77d40047dddebca0c053a451bf2c coot-0.1.2.ebuild 2322
+RMD160 c86ef0b0015d910d3b9c5ea13a96e2275e0c5564 coot-0.1.2.ebuild 2322
+SHA256 54af37529d9971727335f104c61b577966a85aae514f5c7b3a3dcc1a741569b8 coot-0.1.2.ebuild 2322
 EBUILD coot-0.1.2_pre1.ebuild 2309 RMD160 b77d269e0109eaf81385ab6032b1ee04f7edb341 SHA1 5dd2b129e5dc49004813794651467048b2d11beb SHA256 299ba3698340c81283ab20bcd1032e1fc9660293c820e6a046bc60b7df19a784
 MD5 20b825b7c7a8213e3e487a350627cb12 coot-0.1.2_pre1.ebuild 2309
 RMD160 b77d269e0109eaf81385ab6032b1ee04f7edb341 coot-0.1.2_pre1.ebuild 2309
 SHA256 299ba3698340c81283ab20bcd1032e1fc9660293c820e6a046bc60b7df19a784 coot-0.1.2_pre1.ebuild 2309
-MISC ChangeLog 846 RMD160 17c7059c6b68d85c416a5731a5c1c678090e28e3 SHA1 ebc9a9c6af7d9df8815e3a07eba3c67ed3c40fc3 SHA256 bd7e850192468ec874f0c2521cd809a14342a16a029042f42821ddd9062324a7
-MD5 f27863b8823c91e84454b06873708240 ChangeLog 846
-RMD160 17c7059c6b68d85c416a5731a5c1c678090e28e3 ChangeLog 846
-SHA256 bd7e850192468ec874f0c2521cd809a14342a16a029042f42821ddd9062324a7 ChangeLog 846
+MISC ChangeLog 957 RMD160 5a9ff28246fac55bf45f792af838f3161110c613 SHA1 6de084e5da6b3dcaab7dd9d2ce54c30e59690c46 SHA256 93db128b0b925d6637e01300a53125a1b9bec7e9aa43897f49d96a8b184876fa
+MD5 13db816b3c327b92a51d2578a2fb6e7f ChangeLog 957
+RMD160 5a9ff28246fac55bf45f792af838f3161110c613 ChangeLog 957
+SHA256 93db128b0b925d6637e01300a53125a1b9bec7e9aa43897f49d96a8b184876fa ChangeLog 957
 MISC metadata.xml 156 RMD160 dc078172bfebcb25d69bdf8731714f9cce9d3e36 SHA1 da2b240a255820145b7c83a5c48e45b96b7e9ee6 SHA256 5d22100902db7507a5b5493dd4a66cdb08025faf80a2c0b75e6392315c47f900
 MD5 8c623e53daafa025137077c6b65815bd metadata.xml 156
 RMD160 dc078172bfebcb25d69bdf8731714f9cce9d3e36 metadata.xml 156
 SHA256 5d22100902db7507a5b5493dd4a66cdb08025faf80a2c0b75e6392315c47f900 metadata.xml 156
+MD5 39d53022c73d281c3d319c2c0ba3f4c6 files/digest-coot-0.1.2 235
+RMD160 dc807e2c87756c2731686576e75db488978a78e9 files/digest-coot-0.1.2 235
+SHA256 19a197b638681d05d7847a3563ef6cea23606b94a6f3056043ea775fcb88d515 files/digest-coot-0.1.2 235
 MD5 4dbc02767e6b27d8f3569cf6af79cc21 files/digest-coot-0.1.2_pre1 253
 RMD160 d8011ba50b97f25d69286530859110d518c10fe2 files/digest-coot-0.1.2_pre1 253
 SHA256 620c6c8e0faf9a2566a468132cdabfdc7f90ccb1fb26a1d9a33f01c2f472f1ce files/digest-coot-0.1.2_pre1 253
diff --git a/sci-chemistry/coot/coot-0.1.2.ebuild b/sci-chemistry/coot/coot-0.1.2.ebuild
new file mode 100644
index 000000000000..f263dcf187b5
--- /dev/null
+++ b/sci-chemistry/coot/coot-0.1.2.ebuild
@@ -0,0 +1,91 @@
+# Copyright 1999-2006 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/coot/coot-0.1.2.ebuild,v 1.1 2006/09/06 21:59:58 dberkholz Exp $
+
+inherit autotools
+
+MY_PV=${PV/_pre/-pre-}
+MY_P="${PN}-${MY_PV}"
+
+DESCRIPTION="Crystallographic Object-Oriented Toolkit for model building, completion and validation"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~emsley/coot/"
+RESTRICT="mirror"
+if [[ ${MY_PV} = *pre* ]]; then
+	SRC_URI="http://www.ysbl.york.ac.uk/~emsley/software/pre-release/${MY_P}.tar.gz"
+else
+	SRC_URI="http://www.ysbl.york.ac.uk/~emsley/software/${MY_P}.tar.gz"
+fi
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~ppc ~x86"
+IUSE=""
+RDEPEND=">=sci-libs/gsl-1.3
+	=dev-libs/glib-1.2*
+	=x11-libs/gtkglarea-1.2*
+	x11-libs/gtkglext
+	virtual/glut
+	virtual/opengl
+	sci-chemistry/ccp4
+	dev-lang/python
+	x11-libs/gtk-canvas
+	dev-lang/python
+	x11-libs/guile-gtk
+	dev-scheme/guile-gui
+	dev-scheme/net-http
+	dev-scheme/goosh
+	dev-scheme/guile-www
+	sci-libs/coot-data
+	sci-chemistry/reduce
+	sci-chemistry/probe"
+DEPEND="${RDEPEND}"
+S="${WORKDIR}/${MY_P}"
+
+src_unpack() {
+	unpack ${A}
+
+	# Link against single-precision fftw
+	sed -i \
+		-e "s:lfttw:lsfttw:g" \
+		-e "s:lrfttw:lsrfttw:g" \
+		"${S}"/macros/clipper.m4
+
+	# Don't install setup scripts, they're only needed for nonstandard prefixes
+	sed -i \
+		-e "s:^\(setup.*\):#\1:g" \
+		-e "s:.*\(bin_.*\):\1:g" \
+		"${S}"/setup/Makefile.am
+
+	# Fix where it looks for some binaries
+	sed -i \
+		-e "s:/y/people/emsley/coot/Linux/bin/probe.2.11.050121.linux.RH9:${ROOT}usr/bin/probe:g" \
+		-e "s:/y/people/emsley/coot/Linux/bin/reduce.2.21.030604:${ROOT}usr/bin/reduce:g" \
+		"${S}"/scheme/group-settings.scm
+
+	cd "${S}"
+	AT_M4DIR="macros" eautoreconf
+}
+
+src_compile() {
+	# All the --with's are used to activate various parts.
+	# Yes, this is broken behavior.
+	econf \
+		--includedir='${prefix}/include/coot' \
+		--with-gtkcanvas-prefix=/usr \
+		--with-clipper-prefix=/usr \
+		--with-mmdb-prefix=/usr \
+		--with-ssmlib-prefix=/usr \
+		--with-guile=/usr \
+		--with-python=/usr \
+		|| die "econf failed"
+
+	# Parallel build's broken
+	emake -j1 || die "emake failed"
+}
+
+src_install() {
+	make DESTDIR="${D}" install || die "install failed"
+
+	# Install misses this
+	insinto /usr/share/coot/python
+	doins "${S}"/src/coot.py
+}
diff --git a/sci-chemistry/coot/files/digest-coot-0.1.2 b/sci-chemistry/coot/files/digest-coot-0.1.2
new file mode 100644
index 000000000000..7831423bca7a
--- /dev/null
+++ b/sci-chemistry/coot/files/digest-coot-0.1.2
@@ -0,0 +1,3 @@
+MD5 10289f909d6824ef4923a97cfb0e63a4 coot-0.1.2.tar.gz 2704638
+RMD160 bb0ff46297fc7135b1bf31159bf41b18462b916c coot-0.1.2.tar.gz 2704638
+SHA256 fcd2e5862ef57baffc19aa30b1bb48b5271baf0667cc72bf5ecd8a02911fe22a coot-0.1.2.tar.gz 2704638