Install documentation and parameter files. Added test suite. Ebuild clean-up.

Package-Manager: portage-2.1.2.7

4 files changed, 83 insertions, 5 deletions

diff --git a/sci-chemistry/autodock/ChangeLog b/sci-chemistry/autodock/ChangeLog
index e5325d98c8be..2241ba631b29 100644
--- a/sci-chemistry/autodock/ChangeLog
+++ b/sci-chemistry/autodock/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/autodock
 # Copyright 1999-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.3 2007/06/21 14:58:03 ribosome Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/ChangeLog,v 1.4 2007/06/26 18:42:29 ribosome Exp $
+
+*autodock-4.0.1-r1 (26 Jun 2007)
+
+  26 Jun 2007; Olivier Fisette <ribosome@gentoo.org>
+  +autodock-4.0.1-r1.ebuild:
+  Install documentation and parameter files. Added test suite. Ebuild clean-up.
 
   21 Jun 2007; Olivier Fisette <ribosome@gentoo.org> autodock-4.0.1.ebuild:
   Added a notice and URL to encourage Gentoo users to register as AutoDock
diff --git a/sci-chemistry/autodock/Manifest b/sci-chemistry/autodock/Manifest
index 1dc6214a2193..2149b311bc0d 100644
--- a/sci-chemistry/autodock/Manifest
+++ b/sci-chemistry/autodock/Manifest
@@ -1,12 +1,16 @@
 DIST autodocksuite-4.0.1-src.tar.gz 1898212 RMD160 af2709277c1e9d36602c7100091b707937aa32d8 SHA1 3c43d9cf67790b47803a37e9e8ace893018cf874 SHA256 8265e313c575dbb4e284dab90af2ed9b8f34dfdeb45508e652ca5fa9a09dc11b
+EBUILD autodock-4.0.1-r1.ebuild 1678 RMD160 4d1a4fe7d1ff98c9b1d12b98735a881587a5b8a7 SHA1 2368323d2177ea3577e81b5d8387d6cf6febe439 SHA256 e7354c2b5d966a432326675f82826cf4eed2f2c590384ba9464044b6ad5bdc27
+MD5 7fcb03b35a7b5205e0e9ce1a93fbd6c7 autodock-4.0.1-r1.ebuild 1678
+RMD160 4d1a4fe7d1ff98c9b1d12b98735a881587a5b8a7 autodock-4.0.1-r1.ebuild 1678
+SHA256 e7354c2b5d966a432326675f82826cf4eed2f2c590384ba9464044b6ad5bdc27 autodock-4.0.1-r1.ebuild 1678
 EBUILD autodock-4.0.1.ebuild 1138 RMD160 a1ba78e2bd89663670b4d6f8582c22d04ea07b37 SHA1 60f811a48b2d497698d0c890ca6db093eff826dd SHA256 fc9045111ea03f1aaa0340b002384320a8cce2204b1723b4d423af5a6771326d
 MD5 03a3e83643d382a25f5eed23338ef838 autodock-4.0.1.ebuild 1138
 RMD160 a1ba78e2bd89663670b4d6f8582c22d04ea07b37 autodock-4.0.1.ebuild 1138
 SHA256 fc9045111ea03f1aaa0340b002384320a8cce2204b1723b4d423af5a6771326d autodock-4.0.1.ebuild 1138
-MISC ChangeLog 649 RMD160 ee3fce2219fc9446743c5080642465c3f80cd95d SHA1 5bba30f75920f2fa756518e697de4d0ef39378fa SHA256 95404c1a8b556abd706ce96b9eb6d78c6e139ba220131a2328b49390107bc305
-MD5 1859721a22fa10a0589611a5104469e3 ChangeLog 649
-RMD160 ee3fce2219fc9446743c5080642465c3f80cd95d ChangeLog 649
-SHA256 95404c1a8b556abd706ce96b9eb6d78c6e139ba220131a2328b49390107bc305 ChangeLog 649
+MISC ChangeLog 846 RMD160 684e0d7765f836db9ab76ffb000b4b81931f9cf6 SHA1 66c829013a10e40f57783a8f3bbe57f94ad5bc8d SHA256 7652b4abe6e5ba6d1f104d6d331f215d0530a1a193375f5dbaa767d36ced8633
+MD5 2cddc046d89da8ebd7a5709cb8ef0f96 ChangeLog 846
+RMD160 684e0d7765f836db9ab76ffb000b4b81931f9cf6 ChangeLog 846
+SHA256 7652b4abe6e5ba6d1f104d6d331f215d0530a1a193375f5dbaa767d36ced8633 ChangeLog 846
 MISC metadata.xml 264 RMD160 cf3f81a4afc68eaedddaa967f048cdbcf7eef4de SHA1 c7bd1d575fa7ec212a1b64159a15447d86912bbc SHA256 24a6d9dcb843571bf17564df28d51dc16b83c8157a44bda62b1682aa4f4a90fe
 MD5 a1d7b37e094a7fdeebc37fee2f354d38 metadata.xml 264
 RMD160 cf3f81a4afc68eaedddaa967f048cdbcf7eef4de metadata.xml 264
@@ -14,3 +18,6 @@ SHA256 24a6d9dcb843571bf17564df28d51dc16b83c8157a44bda62b1682aa4f4a90fe metadata
 MD5 56a632d08c1ea28110890837a0eb3118 files/digest-autodock-4.0.1 274
 RMD160 185ce80131daf5feab7eddd76d6ec9978e0a8d59 files/digest-autodock-4.0.1 274
 SHA256 6badde2e875467a4ff1ddda83e0d10cb0103f18ae9004dd2794c1bc1742a9e19 files/digest-autodock-4.0.1 274
+MD5 56a632d08c1ea28110890837a0eb3118 files/digest-autodock-4.0.1-r1 274
+RMD160 185ce80131daf5feab7eddd76d6ec9978e0a8d59 files/digest-autodock-4.0.1-r1 274
+SHA256 6badde2e875467a4ff1ddda83e0d10cb0103f18ae9004dd2794c1bc1742a9e19 files/digest-autodock-4.0.1-r1 274
diff --git a/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild b/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild
new file mode 100644
index 000000000000..65b45058f4b2
--- /dev/null
+++ b/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild
@@ -0,0 +1,62 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/autodock/autodock-4.0.1-r1.ebuild,v 1.1 2007/06/26 18:42:29 ribosome Exp $
+
+MY_PN="autodocksuite"
+MY_P="${MY_PN}-${PV}"
+
+DESCRIPTION="A suite of automated docking tools"
+HOMEPAGE="http://autodock.scripps.edu/"
+SRC_URI="mirror://gentoo/${MY_PN}/${MY_P}-src.tar.gz"
+
+LICENSE="GPL-2"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE=""
+
+S="${WORKDIR}/${MY_P}/src"
+
+src_compile() {
+	cd autodock/
+	econf || die "AutoDock econf failed."
+	emake || die "AutoDock emake failed."
+	cd ..
+
+	cd autogrid/
+	econf || die "AutoGrid econf failed."
+	emake || die "AutoGrid emake failed."
+	cd ..
+}
+
+src_install() {
+	cd "${S}/autodock"
+	dobin autodock4 || die "Failed to install autodock binary."
+	dodoc AUTHORS ChangeLog NEWS README || die \
+			"Failed to install documentation."
+	insinto "/usr/share/autodock"
+	doins AD4_parameters.dat AD4_PARM99.dat || die \
+			"Failed to install shared files."
+
+	cd "${S}/autogrid"
+	dobin autogrid4 || die "Failed to install autogrid binary."
+}
+
+src_test() {
+	cd "${S}/autodock/Tests"
+	python test_autodock4.py || die "AutoDock tests failed."
+	cd "${S}/autogrid/Tests"
+	python test_autogrid4.py || die "AutoGrid tests failed."
+}
+
+pkg_postinst() {
+	echo
+	einfo "The AutoDock development team requests all users to fill out the"
+	einfo "registration form at:"
+	einfo
+	einfo "\thttp://autodock.scripps.edu/downloads/autodock-registration"
+	einfo
+	einfo "The number of unique users of AutoDock is used by Prof. Arthur J."
+	einfo "Olson and the Scripps Research Institude to support grant"
+	einfo "applications."
+	echo
+}
diff --git a/sci-chemistry/autodock/files/digest-autodock-4.0.1-r1 b/sci-chemistry/autodock/files/digest-autodock-4.0.1-r1
new file mode 100644
index 000000000000..21c073671cb2
--- /dev/null
+++ b/sci-chemistry/autodock/files/digest-autodock-4.0.1-r1
@@ -0,0 +1,3 @@
+MD5 da0e9c67ab539964a734e4de6840506a autodocksuite-4.0.1-src.tar.gz 1898212
+RMD160 af2709277c1e9d36602c7100091b707937aa32d8 autodocksuite-4.0.1-src.tar.gz 1898212
+SHA256 8265e313c575dbb4e284dab90af2ed9b8f34dfdeb45508e652ca5fa9a09dc11b autodocksuite-4.0.1-src.tar.gz 1898212