diff options
author | Justin Lecher <jlec@gentoo.org> | 2010-02-17 11:34:50 +0000 |
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committer | Justin Lecher <jlec@gentoo.org> | 2010-02-17 11:34:50 +0000 |
commit | a507153ccb4ad32cd1b4d939ef1ad5ff9295d8fa (patch) | |
tree | 56c5e1dca82d22fe2942c55f7ab57dc351988865 /sci-chemistry/xdsi | |
parent | [www-client/arora] resurrected 0.10.1 - most recent version that supports Qt 4.5 (diff) | |
download | historical-a507153ccb4ad32cd1b4d939ef1ad5ff9295d8fa.tar.gz historical-a507153ccb4ad32cd1b4d939ef1ad5ff9295d8fa.tar.bz2 historical-a507153ccb4ad32cd1b4d939ef1ad5ff9295d8fa.zip |
New ebuild for xdsi
Package-Manager: portage-2.2_rc62/cvs/Linux i686
Diffstat (limited to 'sci-chemistry/xdsi')
-rw-r--r-- | sci-chemistry/xdsi/ChangeLog | 10 | ||||
-rw-r--r-- | sci-chemistry/xdsi/Manifest | 15 | ||||
-rw-r--r-- | sci-chemistry/xdsi/files/0.91-gentoo.patch | 24 | ||||
-rw-r--r-- | sci-chemistry/xdsi/metadata.xml | 17 | ||||
-rw-r--r-- | sci-chemistry/xdsi/xdsi-0.91.ebuild | 49 |
5 files changed, 115 insertions, 0 deletions
diff --git a/sci-chemistry/xdsi/ChangeLog b/sci-chemistry/xdsi/ChangeLog new file mode 100644 index 000000000000..75c3d38bd013 --- /dev/null +++ b/sci-chemistry/xdsi/ChangeLog @@ -0,0 +1,10 @@ +# ChangeLog for sci-chemistry/xdsi +# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsi/ChangeLog,v 1.1 2010/02/17 11:34:49 jlec Exp $ + +*xdsi-0.91 (17 Feb 2010) + + 17 Feb 2010; Justin Lecher (jlec) <jlec@j-schmitz.net> + +files/0.91-gentoo.patch, +xdsi-0.91.ebuild, +metadata.xml: + Initial addition + diff --git a/sci-chemistry/xdsi/Manifest b/sci-chemistry/xdsi/Manifest new file mode 100644 index 000000000000..d7e3ab563bdf --- /dev/null +++ b/sci-chemistry/xdsi/Manifest @@ -0,0 +1,15 @@ +-----BEGIN PGP SIGNED MESSAGE----- +Hash: SHA1 + +AUX 0.91-gentoo.patch 634 RMD160 bf2c7d7da6049fee4ee415e6a1af6759b03f3ed0 SHA1 01ef2f1e1d335a38017370119648987c8e8c13a8 SHA256 300dd8ae306581adf01f6081ea3fdc68e6864b9e6987d624fb779a91cb615f3c +DIST xdsi_0.91.tar.gz 682436 RMD160 30331a4197670c39493e1e6849268a1b0aa21705 SHA1 c058abc05bc9e9fa4d3bd497e1ba055fd942c4a5 SHA256 81bb385d2676c597ff0fc764905ec38b2dfa6b81870844159e40520f6e77b5b2 +EBUILD xdsi-0.91.ebuild 1272 RMD160 5934d62466a998dfdb5db2462e08b9835a8a469c SHA1 77cbe3910629e6cca969b19413e0f2adb5de69b8 SHA256 dd622f0fb6705413ace8045239a7b6516abf7ce86550a16123b16e7e729c9716 +MISC ChangeLog 372 RMD160 15f1edd5335e77c8e5c0d1775a9f7b5b2a7e6155 SHA1 45f3a4a2bd8f64d45fc8a118f317dbe7b79fcb8b SHA256 e19d8b905000b4fca5f74f3acffea54bdd84747341abaf6eb823088a061be476 +MISC metadata.xml 978 RMD160 63790119834f78851cbcf92ccd3ca615af95a889 SHA1 35aad499b8658979f0ed26c1c8253fd001e72996 SHA256 fc9c2aa0c9ef8003ee3c95e37c6c68c0b7364d755c70e1a7b6276aa4baa1efcf +-----BEGIN PGP SIGNATURE----- +Version: GnuPG v2.0.14 (GNU/Linux) + +iEYEARECAAYFAkt71F8ACgkQgAnW8HDreRb3EQCgiBCkFcYEmqa8qTuHU7xemNu8 +8gYAnjq3AL0ru6b92KP73XcUARtZLRMT +=SmMP +-----END PGP SIGNATURE----- diff --git a/sci-chemistry/xdsi/files/0.91-gentoo.patch b/sci-chemistry/xdsi/files/0.91-gentoo.patch new file mode 100644 index 000000000000..a21752bf5f68 --- /dev/null +++ b/sci-chemistry/xdsi/files/0.91-gentoo.patch @@ -0,0 +1,24 @@ +diff --git a/xdsi b/xdsi +index 2fcc543..2ce8262 100755 +--- a/xdsi ++++ b/xdsi +@@ -20,8 +20,8 @@ + #################################################################### + # These are the only two things you may change# + +-set Templates "/mydir/templates" +-set initial "/mydir/SLS-2009" ++set Templates "GENTOOTEMPLATE" ++set initial "./" + + + #################################################################### +@@ -122,7 +122,7 @@ return 1 + } + + +-CheckExecutables "kpdf gnuplot xds_par xdsstat xdsviewer convert pointless ipmosflm VIEW" ++CheckExecutables "xpdf gnuplot xds_par xdsviewer convert pointless ipmosflm" + + wm resizable . 0 0 + diff --git a/sci-chemistry/xdsi/metadata.xml b/sci-chemistry/xdsi/metadata.xml new file mode 100644 index 000000000000..42fa47ea8165 --- /dev/null +++ b/sci-chemistry/xdsi/metadata.xml @@ -0,0 +1,17 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> +<herd>sci</herd> +<maintainer> + <email>jlec@gentoo.org</email> +</maintainer> +<longdescription> +XDSi offers you the possibility to process all your datasets in a given directory with minimum effort. +* You just have to provide it with a resultdirectory and the directory where your frames are stored. +* All datasets consisting of more than 100 frames within the given directory and all its subdirectories will be processed. +* For each dataset a space group assignment is done using POINTLESS of the CCP4 software package +* Plots of the most informative statistics of INTEGRATE.LP, CORRECT.LP and XDSSTAT.LP are generated for each dataset +* A plot comparing Rmeas, I/sig and Completeness of all the processed datasets is generated +* You can also generate plots for datasets that have been processed using XDS without XDSi +</longdescription> +</pkgmetadata> diff --git a/sci-chemistry/xdsi/xdsi-0.91.ebuild b/sci-chemistry/xdsi/xdsi-0.91.ebuild new file mode 100644 index 000000000000..fdd6d406900c --- /dev/null +++ b/sci-chemistry/xdsi/xdsi-0.91.ebuild @@ -0,0 +1,49 @@ +# Copyright 1999-2010 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/xdsi/xdsi-0.91.ebuild,v 1.1 2010/02/17 11:34:49 jlec Exp $ + +EAPI="3" + +inherit eutils + +DESCRIPTION="A crude interface for running the XDS" +HOMEPAGE="http://strucbio.biologie.uni-konstanz.de/xdswiki/index.php/Xdsi" +SRC_URI="ftp://turn14.biologie.uni-konstanz.de/pub/${PN}/${PN}_${PV}.tar.gz" + +LICENSE="as-is" +SLOT="0" +KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" +IUSE="" + +RDEPEND=" + sci-chemistry/mosflm + sci-chemistry/xds-bin[smp] + sci-chemistry/pointless + sci-visualization/xds-viewer + sci-visualization/gnuplot + media-gfx/imagemagick + app-text/xpdf + dev-lang/tk" +# Need to clarified for licensing +# sci-chemistry/xdsstat-bin +DEPEND="" + +S="${WORKDIR}" + +src_prepare() { + epatch "${FILESDIR}"/${PV}-gentoo.patch + sed "s:GENTOOTEMPLATE:${EPREFIX}/usr/share/${PN}/templates:g" -i ${PN} \ + || die +} + +src_install() { + dobin ${PN} || die + insinto /usr/share/${PN}/templates + doins templates/{*.INP,bohr*,fortran,pauli,info.png,*.pck,tablesf_xdsi} || die + dodoc templates/*.pdf || die +} + +pkg_postinst() { + elog "Documentation can be found here:" + elog "ftp://turn14.biologie.uni-konstanz.de/pub/xdsi/xdsi_doc_print.pdf" +} |