Version Bump

Package-Manager: portage-2.2.0_alpha15/cvs/Linux x86_64

3 files changed, 84 insertions, 5 deletions

diff --git a/sci-chemistry/refmac/ChangeLog b/sci-chemistry/refmac/ChangeLog
index 1dc1c73d01b7..d53ade912998 100644
--- a/sci-chemistry/refmac/ChangeLog
+++ b/sci-chemistry/refmac/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-chemistry/refmac
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.34 2011/01/11 14:12:34 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.35 2011/01/14 16:05:44 jlec Exp $
+
+*refmac-5.6.0099 (14 Jan 2011)
+
+  14 Jan 2011; Justin Lecher <jlec@gentoo.org> +refmac-5.6.0099.ebuild:
+  Version Bump
 
 *refmac-5.6.0098 (11 Jan 2011)
 
diff --git a/sci-chemistry/refmac/Manifest b/sci-chemistry/refmac/Manifest
index 3a03896a6bc0..df8ccf656b15 100644
--- a/sci-chemistry/refmac/Manifest
+++ b/sci-chemistry/refmac/Manifest
@@ -21,17 +21,19 @@ AUX 5.6.0097-allow-dynamic-linking.patch 15960 RMD160 d5b0c7a0dcb3e3ca32d6c22b47
 AUX 5.6.0098-allow-dynamic-linking.patch 16190 RMD160 748fad762e601897bd81ba936d50a0d213e5226f SHA1 25c320391370d8226bdbf163f973693205cdc25a SHA256 a439334cf935321fb050c83b03faf6df212fcbb31255b4223db8a30215db09e3
 DIST refmac5.6_source_v5.6.0097.tar.gz 1385352 RMD160 794ec5b52fd3e59743a9a5f6e4e53e2b18b5eff7 SHA1 fee5a0b542f47c2f6c693489b2ca6bbc13b3a74d SHA256 127a260491cb8db7d670b6b9a48c74685bfd07e64e7819533b141ae7a90b055d
 DIST refmac5.6_source_v5.6.0098.tar.gz 1385701 RMD160 b0348e9b8c0e5a3318d8d5fb589c9d62a41ae080 SHA1 c1484972ad783b56c948c50b49a351cce87241d6 SHA256 dc38426128109148f1c2b066e5162487d94e5cc0dddc4a14ac244cd36d7fc007
+DIST refmac5.6_source_v5.6.0099.tar.gz 1386351 RMD160 7ddc195259e47462f749a9ca06dae69eb159dbf7 SHA1 8460e6d30fdfeda4056559c0b93bc8562bdf5f94 SHA256 d91da122372b2c0895f4c344bded6e4433d2948ed4320e40bf46783b1940a77e
 DIST refmac_5.5.0110.tar.gz 1326832 RMD160 6613ca8b70e54e7827f8ff02b7d497560cb83e39 SHA1 ba2e38db6c88550bd901b474de881d6514b4d74e SHA256 1353fb1042586ec8fa37d0a90f274890d0ccc02377af5216200662338dfe08ca
 DIST test-framework.tar.gz 130933173 RMD160 7122539dc713615dca2ddaddfd8d152cd22624d0 SHA1 1d3e3019a67afb9b2346e919c859d402d3250fea SHA256 df050a2a29da80518cb0616a0bbeb82298ea0721549348d15353bf0f66240605
 EBUILD refmac-5.5.0110-r2.ebuild 1824 RMD160 66ee74d3ad7d30ea6d3ea3745f19d16ff88d2a6c SHA1 d688481fa44f0dd2334fd627036056ba2ff42f08 SHA256 6a2946301ff25f61b39c8e18934fc634f3b2ce8d409fb247b5baae55be9facf4
 EBUILD refmac-5.6.0097.ebuild 1812 RMD160 8ac3b3b983d1e935676a62f5809f9ebbdac35a04 SHA1 7f28d6629c250235d4cf6a5a21a9cd1815c20e52 SHA256 d708ff29109fddfb73097f78a03887032003fcf1af1d3bd3628bec0ba87700ee
 EBUILD refmac-5.6.0098.ebuild 1812 RMD160 00ff3460e14bd93892b2d140cd658337e3fd3ffa SHA1 3faf51d47f8708dbf02522ad6ad50f50c8ec58b9 SHA256 944eb2715f3fe5a68c28e1ecc355467ac5eb892033dc534771f85dbcca326df7
-MISC ChangeLog 6185 RMD160 274f84f9428b82cfe9b7139c6dbaeafdc22af159 SHA1 66280ae4059bcc4d9e5e2c80197793c4ac2a7ed0 SHA256 f5528600767934d827e4ebfa40b13814b50cfd72caa747dfbd21670f20ac2be3
+EBUILD refmac-5.6.0099.ebuild 1818 RMD160 760029e7723ab19ace75f7fb00c834bf8afd7e27 SHA1 d21c93bcb3b80c675285cb0a5b9565d28246fb53 SHA256 4c0e782ac8dca6a17ce222651b01e50c62a86656979b696b18304b8750b512b2
+MISC ChangeLog 6305 RMD160 3af051e90e0a112a85080e4ed3fc62873d7e9848 SHA1 db5af020340ff295c68ed93bddf9d9a62a889fd2 SHA256 1c54654e5e96834d0448ff205b20e98eda78562f81356510b1513f1ed80c4637
 MISC metadata.xml 311 RMD160 df83b13d491a71b729455b664088d89ddbde1c8c SHA1 fffd2a5645181aa12ac9b6f74da9a011cdcf1b97 SHA256 782521c7e16d7eec82d7b7e7c43102806e7f72bc7366401808b1e1ac6e26045a
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-=Lbpf
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diff --git a/sci-chemistry/refmac/refmac-5.6.0099.ebuild b/sci-chemistry/refmac/refmac-5.6.0099.ebuild
new file mode 100644
index 000000000000..655e041d4be8
--- /dev/null
+++ b/sci-chemistry/refmac/refmac-5.6.0099.ebuild
@@ -0,0 +1,72 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0099.ebuild,v 1.1 2011/01/14 16:05:44 jlec Exp $
+
+EAPI="2"
+
+inherit base toolchain-funcs versionator
+
+MY_PV="$(get_version_component_range 1-2)_source_v${PV}"
+
+DESCRIPTION="Macromolecular crystallographic refinement program"
+HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac"
+SRC_URI="
+	${HOMEPAGE}/data/refmac_experimental/${PN}${MY_PV}.tar.gz
+	test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )"
+
+SLOT="0"
+LICENSE="ccp4"
+KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
+IUSE="test"
+
+RDEPEND="
+	>=sci-libs/ccp4-libs-6.1.3-r7
+	sci-libs/mmdb
+	>sci-libs/monomer-db-1
+	virtual/blas
+	virtual/lapack"
+DEPEND="${RDEPEND}"
+
+S="${WORKDIR}"
+
+PATCHES=(
+	"${FILESDIR}"/${PV/99/98}-allow-dynamic-linking.patch
+	)
+
+src_prepare() {
+	base_src_prepare
+	use test && epatch "${FILESDIR}"/5.5-test.log.patch
+}
+
+src_compile() {
+	emake \
+		FC=$(tc-getFC) \
+		CC=$(tc-getCC) \
+		CXX=$(tc-getCXX) \
+		COPTIM="${CFLAGS}" \
+		FOPTIM="${FFLAGS:- -O2}" \
+		VERSION="" \
+		XFFLAGS="-fno-second-underscore" \
+		LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \
+		LLIBLAPACK="$(pkg-config --libs lapack blas)" \
+		|| die
+}
+
+src_test() {
+	einfo "Starting tests ..."
+	export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}"
+	export CCP4_TEST="${WORKDIR}"/test-framework
+	export CCP4_SCR="${T}"
+	ln -sf refmac "${S}"/refmac5
+	sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb
+	ccp4-run-thorough-tests -v test_refmac5 || die
+}
+
+src_install() {
+	for i in refmac libcheck FreeTwin header2matr; do
+		exeinto /usr/libexec/ccp4/bin/
+		doexe ${i} || die
+		dosym ../libexec/ccp4/bin/${i} /usr/bin/${i}
+	done
+	dosym refmac /usr/bin/refmac5 || die
+}