Version Bump, notified by euscan

Package-Manager: portage-2.2.0_alpha31/cvs/Linux x86_64

4 files changed, 91 insertions, 7 deletions

diff --git a/sci-chemistry/probe/ChangeLog b/sci-chemistry/probe/ChangeLog
index 1e0be3a5494f..c2e0a9f3a5a1 100644
--- a/sci-chemistry/probe/ChangeLog
+++ b/sci-chemistry/probe/ChangeLog
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/probe
-# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/ChangeLog,v 1.10 2010/07/06 13:30:24 jlec Exp $
+# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/ChangeLog,v 1.11 2011/05/06 07:26:57 jlec Exp $
+
+*probe-2.12.110413 (06 May 2011)
+
+  06 May 2011; Justin Lecher <jlec@gentoo.org>
+  +files/2.12.110413-as-needed.patch, +probe-2.12.110413.ebuild:
+  Version Bump, notified by euscan
 
 *probe-2.12.071128-r1 (06 Jul 2010)
 
diff --git a/sci-chemistry/probe/Manifest b/sci-chemistry/probe/Manifest
index d9ce6fe1aba1..350a6c653fb4 100644
--- a/sci-chemistry/probe/Manifest
+++ b/sci-chemistry/probe/Manifest
@@ -1,18 +1,21 @@
 -----BEGIN PGP SIGNED MESSAGE-----
 Hash: SHA1
 
+AUX 2.12.110413-as-needed.patch 1339 RMD160 6b169c85d81c15203470c0f51ff89b24cd0254f9 SHA1 c7d3cf79a3b254ac265a3463d55ec578d54965b0 SHA256 938b52b3323c9db494a7e0192381c3469c16f3c53c77b881106c81b9760cc860
 AUX as-needed.patch 594 RMD160 9dbc42aaff30aa2eabfd2e038ae967af91a2f542 SHA1 6ea451e5cf7bf38018c9d72ff74ea16d7d1b8b20 SHA256 1f46ff455ac4167fe56051fa2fb8859ee5c504429b70abb787ccf8a480fb7065
 DIST probe.2.11.050121.src.tgz 99403 RMD160 85d65f7c7379e8d4c46fe5c3b19a2d67fc12a32e SHA1 7fd88ec312558b6f2eb0b6da412140cb83e1a9f4 SHA256 c37255142e37df3d59da6be935bd79c799b5e703fc453b3978298617b0c0b278
 DIST probe.2.12.071128.src.zip 130039 RMD160 8ca1aa70fb614c412ea9fbfae5a1c2b4baa19178 SHA1 9607f984b11f4e6b8ff00768cfde458aba007607 SHA256 470c4280eab18ce96bc323c5a1151933e9c6b412e5f587c4b77ac4ab152bddbb
+DIST probe.2.12.110413.src.zip 262460 RMD160 6b98259f7ad4e420b84563df6741f99e90fd99a7 SHA1 b453802a13b0c4f05011a045ff18d63744e25f6a SHA256 90cd0a693683958a8ac05d13a47c2b464f2939df24369bf5c568f59913756de4
 EBUILD probe-2.11.050121.ebuild 870 RMD160 ba3219a6aefc687db24f16c8dcd87a35c8bae51a SHA1 1dcf51c09d85f83b8377bca0b5c60d49e034dd16 SHA256 8d402fc20ac542b08523d0a0fddfff6e3f2e2a215af7885b6a57138cc685894a
 EBUILD probe-2.12.071128-r1.ebuild 998 RMD160 6fba82988a347879c9d42cddb0e31cabc7cccb45 SHA1 2a4c1088cf0aae97e9b526e93a795b71bd865a17 SHA256 23393921e37445e421d843a0f96de70d11d0d8f6f170320c985f29bcaaec047a
 EBUILD probe-2.12.071128.ebuild 952 RMD160 c737e1b74cb047adcce846b5c32a8c993dd856d1 SHA1 0d2b5521dee8735f5136af3a70b9457e70ce8572 SHA256 edb3f3293143f0a218d55ec7d57a5df0e5e464e3547f49cac09283826c1571fc
-MISC ChangeLog 1598 RMD160 c3abdf37f5a1bf530c254c133b929ebd7246c576 SHA1 ffb2c031c381c6e60f3fbfae0c2a77b494af6b6c SHA256 943a1cfb6c9aedfaeaa35be9f684027f9cada87fcccc7c395c160e08d7729dbb
+EBUILD probe-2.12.110413.ebuild 868 RMD160 89385364791f640aa87283a9886cb5d856c8660f SHA1 f0c5cb0f5419113d6c675013b9e2d0ccb6243a67 SHA256 04f38ec7e1a39e72a955c4de1bbf70ea1e79b58ded6eb2fa7db9adebbd5805f9
+MISC ChangeLog 1780 RMD160 674f2ac0881294ae88f5addcbdca166c4b591a49 SHA1 d728f2652a24a04169dc766fb547ec2a74d96ed5 SHA256 6ee19f3fd0dc436c035f59b8f3a34e68c64b89f99d5d1570c5a719dc0760ae40
 MISC metadata.xml 166 RMD160 4452298fd03e7c9395d1182bfe69d60a14144af6 SHA1 cb0b513473c0348f4f6f6cd9a132e4884155fddb SHA256 84c92b49702daf95eace8d2765215cbd8650da4ef776f9f700b5ce3785dec852
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.15 (GNU/Linux)
+Version: GnuPG v2.0.17 (GNU/Linux)
 
-iEYEARECAAYFAkwzL/YACgkQgAnW8HDreRbY+ACgnDP9fEACIOk483gsMouCH4VE
-EJYAoMjzqp7NgaDzO0voU3AyizuTcUEn
-=Z4p6
+iEYEARECAAYFAk3DosYACgkQgAnW8HDreRacvwCeO4tZH+gcu6MrmA379u1JsHlL
+NLkAn3/SrZtBsG/p5mOIQfwdDxlbOIMM
+=dvdw
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/probe/files/2.12.110413-as-needed.patch b/sci-chemistry/probe/files/2.12.110413-as-needed.patch
new file mode 100644
index 000000000000..95368625505d
--- /dev/null
+++ b/sci-chemistry/probe/files/2.12.110413-as-needed.patch
@@ -0,0 +1,38 @@
+ Makefile |   13 ++++++-------
+ 1 files changed, 6 insertions(+), 7 deletions(-)
+
+diff --git a/Makefile b/Makefile
+index e6a740e..8f74d6a 100644
+--- a/Makefile
++++ b/Makefile
+@@ -1,14 +1,12 @@
+-MACHINEFLAGS = 
+-CFLAGS = $(MACHINEFLAGS)
+-LFLAGS = -lm $(MACHINEFLAGS)
++LIBS = -lm
+ OBJLIST = dots.o abin.o readPDBrecs.o geom3d.o utility.o select.o \
+-	 parse.o atomprops.o stdconntable.o autobondrot.o
++	 parse.o atomprops.o stdconntable.o autobondrot.o hybrid_36_c.o
+ 
+ .c.o:
+-	cc -c $*.c $(CFLAGS)
++	$(CC) $(CFLAGS) -c $*.c
+ 
+ probe: probe.o $(OBJLIST)
+-	cc -o $@ probe.o $(OBJLIST) $(LFLAGS)
++	$(CC) $(CFLAGS) $(LDFLAGS) -o $@ probe.o $(OBJLIST) $(LIBS)
+ 
+ clean:
+ 	@rm -f *.o *.ckp
+@@ -30,9 +28,10 @@ parse.o:	./parse.h	./utility.h	parse.c
+ probe.o:	./abin.h	./atomprops.h	./autobondrot.h	./dots.h	./geom3d.h \
+ 		./parse.h	./probe.h	./readPDBrecs.h	./select.h \
+ 		./stdconntable.h	./utility.h	probe.c
+-readPDBrecs.o:	./geom3d.h	./readPDBrecs.h	./utility.h	readPDBrecs.c
++readPDBrecs.o:	./geom3d.h	./readPDBrecs.h	./utility.h	./hybrid_36_c.h readPDBrecs.c
+ select.o:	./abin.h	./atomprops.h	./geom3d.h	./parse.h	./select.h \
+ 		./stdconntable.h	./utility.h	select.c
+ stdconntable.o:	./stdconntable.h	stdconntable.c
+ utility.o:	utility.c
++hybrid_36_c.o:  ./hybrid_36_c.h	hybrid_36_c.c
+ # DO NOT DELETE THIS 2nd LINE -- make depend uses it
diff --git a/sci-chemistry/probe/probe-2.12.110413.ebuild b/sci-chemistry/probe/probe-2.12.110413.ebuild
new file mode 100644
index 000000000000..a7a6bb8f7505
--- /dev/null
+++ b/sci-chemistry/probe/probe-2.12.110413.ebuild
@@ -0,0 +1,37 @@
+# Copyright 1999-2011 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/probe/probe-2.12.110413.ebuild,v 1.1 2011/05/06 07:26:57 jlec Exp $
+
+EAPI=4
+
+inherit eutils toolchain-funcs
+
+MY_P="${PN}.${PV}"
+DESCRIPTION="Evaluates atomic packing within or between molecules"
+HOMEPAGE="http://kinemage.biochem.duke.edu/software/probe.php"
+SRC_URI="http://kinemage.biochem.duke.edu/downloads/software/probe/${MY_P}.src.zip"
+
+LICENSE="richardson"
+SLOT="0"
+KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
+IUSE=""
+
+RDEPEND=""
+DEPEND="${RDEPEND}
+	app-arch/unzip"
+
+S="${WORKDIR}"/trunk
+
+src_prepare() {
+	epatch "${FILESDIR}"/${PV}-as-needed.patch
+	# Respect CC
+	sed -i \
+		-e 's:cc:$(CC):g' \
+		"${S}"/Makefile || die
+	tc-export CC
+}
+
+src_install() {
+	dobin "${S}"/probe
+	dodoc "${S}"/README*
+}