sci-chemistry/pdb-extract: Drop old

Package-Manager: portage-2.2.0_alpha101/cvs/Linux x86_64

4 files changed, 15 insertions, 148 deletions

diff --git a/sci-chemistry/pdb-extract/ChangeLog b/sci-chemistry/pdb-extract/ChangeLog
index f2c7b8d33b88..42082a236dc8 100644
--- a/sci-chemistry/pdb-extract/ChangeLog
+++ b/sci-chemistry/pdb-extract/ChangeLog
@@ -1,6 +1,13 @@
 # ChangeLog for sci-chemistry/pdb-extract
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.18 2011/08/01 19:27:59 maekke Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/ChangeLog,v 1.19 2012/04/24 06:20:06 jlec Exp $
+
+  24 Apr 2012; Justin Lecher <jlec@gentoo.org> -pdb-extract-1.700.ebuild,
+  -pdb-extract-3.004-r1.ebuild:
+  Drop old
+
+  24 Apr 2012; Justin Lecher <jlec@gentoo.org> Manifest:
+  Drop old
 
   01 Aug 2011; Markus Meier <maekke@gentoo.org> pdb-extract-3.004-r2.ebuild:
   amd64/x86 stable, bug #375901
diff --git a/sci-chemistry/pdb-extract/Manifest b/sci-chemistry/pdb-extract/Manifest
index a703b2127fce..e5ec0c03f375 100644
--- a/sci-chemistry/pdb-extract/Manifest
+++ b/sci-chemistry/pdb-extract/Manifest
@@ -1,22 +1,19 @@
 -----BEGIN PGP SIGNED MESSAGE-----
-Hash: SHA1
+Hash: SHA512
 
 AUX pdb-extract-3.004-Makefile.patch 1530 RMD160 ba4b642e37c26643dd682288f16db6fa9178cd6d SHA1 d50fb483a835a0a2c98e8306050fbfa10bbc6ef8 SHA256 b1e30c706e90757c436617af595e1dd79e3eb79e3e7449ef64dee757ebb04db7
 AUX pdb-extract-3.004-cflags-install.patch 7218 RMD160 c596e67b38f4058d69fd0e9626450a57dcef629d SHA1 f6a86b03ed9797d60278ba9466f66d4b255c6789 SHA256 cac3cf50b6fbf21dd03e096a9c02f9b4280e46818307c9452c6b4f4e988ed206
 AUX pdb-extract-3.004-env.patch 501 RMD160 6698680915a9e585f7a8c4d266f5c644e3229ce0 SHA1 ccc2371360fb6da39a6370132764ee97952387b1 SHA256 ccba5db2e3e6eb18465c62b795635ea4ecfbd6695f36376bc298132f986dd8ff
 AUX pdb-extract-3.004-gcc-4.3.patch 573 RMD160 a9d563b1834bf6293568793a1895026f5b5b9d39 SHA1 bc726c4461ead9faae1694eff53603726d53d91a SHA256 e92f42fb84198e8b543edc364565804f61fbb440da03103506bcb6e6848750ed
 AUX respect-cflags-and-fix-install.patch 8415 RMD160 b1418278385f197db26a49be4bf1ad2bbed4b4c0 SHA1 93bd785a4683542716309d917335de7a9c3573d4 SHA256 ab44177b9a9e34573331aafeb112efa86154a0c1ee706930aa05c32c0eb1e58b
-DIST pdb-extract-v1.700-prod-src.tar.gz 9081548 RMD160 c565de9af1cea09ccf0bd59527191fc76a4b7aa1 SHA1 27eedd1d46e95e7006c90694e379bdcb4f20fd92 SHA256 b35d2bf5d7f96580782a3645ab288aec1be21926bf52969f4de74d4f514a471c
 DIST pdb-extract-v3.004-prod-src.tar.gz 942450 RMD160 3d5d46e668a52109678fdf59afbe664dac1643f9 SHA1 7b5d7ce200d33e68fa352cd3658e382bc37e9768 SHA256 58bef2aba4869cdd16a79ddc588da5596a2ccd1f5c925f300b63b6d8299bb953
-EBUILD pdb-extract-1.700.ebuild 1456 RMD160 06b11dbb0c91e4221d47994242ae0bb50776e300 SHA1 22685588041edf20a66c1a117cfb7b468849d278 SHA256 cbd03b0b7e6ae6d2edf53254b855b12169f56e92dac29cb6b293d71e458a72fc
-EBUILD pdb-extract-3.004-r1.ebuild 2354 RMD160 019c3f8cf60d9f2bb5f133e5d2f009376fc00c45 SHA1 6622b6b4afc699c11d8e2884e7454e25a6f66ba7 SHA256 d006c2e59e6e0bac7572df5d1c32903a81184a09b4c0cc0e9dda20a0d906d055
 EBUILD pdb-extract-3.004-r2.ebuild 2102 RMD160 1417b0c56a0d5bf18fb21fb8bc35beebfc6a74cf SHA1 c40ef4f41464cb8bc18355112b9a8514c70763b8 SHA256 da31319913debf0ee0fb6604e8ab4c392a4f9f9c0a8e8a7657f0dfd44017f423
-MISC ChangeLog 2913 RMD160 6c370055e53008de527462f5194f094db0fe6358 SHA1 582491f0754a469d3cc57dda72ecef7e6a919003 SHA256 31bf11f7c4d51f6d56181d1d25f257edc027cf0b423cb8d96588bcc8c45b5bf9
+MISC ChangeLog 3098 RMD160 d602f26d1d0812920c173ce44180ff9314a2940e SHA1 ec3838b16d45d8f8953eda9e1eed4515d5b486ed SHA256 2dc10b4abbac08f53e6e91dd33f607faa21829646c8f4b2214c2ed313d1ef9b2
 MISC metadata.xml 167 RMD160 ea4003a55d6e2079381a540c441fc59cde29025a SHA1 3bc6dc4dd68f7de22828138e62aa117387b1765d SHA256 f313eeec4ebffac500b57a98a225e32c77489fc826a50494749b6cdeec28e3e8
 -----BEGIN PGP SIGNATURE-----
-Version: GnuPG v2.0.17 (GNU/Linux)
+Version: GnuPG v2.0.19 (GNU/Linux)
 
-iEYEARECAAYFAk42/mcACgkQkKaRLQcq0GJopACfTrElOsT/ssgG+MYiFd+8hGtK
-AmcAn3xnJB4wjiM/lAdEKhZbEVPz/siN
-=87Lr
+iEYEAREKAAYFAk+WRjMACgkQgAnW8HDreRaz7gCgu4PfVUsgD7fZ886ZLgR5rjtN
+ERgAnjO/HPp79H1KQW7iXsUtDqmvR3Az
+=0Khz
 -----END PGP SIGNATURE-----
diff --git a/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild b/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild
deleted file mode 100644
index 0aa1036a20b2..000000000000
--- a/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild
+++ /dev/null
@@ -1,56 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-1.700.ebuild,v 1.7 2011/07/21 19:04:04 jlec Exp $
-
-inherit eutils toolchain-funcs multilib
-
-MY_P="${PN}-v${PV}-prod-src"
-
-DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
-HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
-SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"
-
-LICENSE="PDB"
-SLOT="0"
-KEYWORDS="~amd64 ppc x86"
-IUSE=""
-
-RDEPEND=""
-DEPEND="${RDEPEND}
-	sci-libs/cifparse-obj"
-PDEPEND="sci-libs/rcsb-data"
-
-S="${WORKDIR}/${MY_P}"
-
-src_unpack() {
-	unpack ${A}
-	epatch "${FILESDIR}"/respect-cflags-and-fix-install.patch
-	cd "${S}"
-
-	# Get rid of unneeded directories, to make sure we use system files
-	ebegin "Deleting redundant directories"
-	rm -rf btree-obj* ciflib-common* cifobj-common* cif-table-obj* maxit* \
-		misclib* regex* validation*
-	eend
-
-	sed -i \
-		-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
-		-e "s:^\(GINCLUDE=\).*:\1-I/usr/include/rcsb:g" \
-		-e "s:^\(LIBDIR=\).*:\1/usr/$(get_libdir):g" \
-		"${S}"/etc/make.*
-}
-
-src_compile() {
-	emake || die "make failed"
-}
-
-src_install() {
-	exeinto /usr/bin
-	doexe bin/* || die
-	dolib.a lib/* || die
-	insinto /usr/include/rcsb
-	doins include/* || die
-	dodoc README-source README
-	insinto /usr/lib/rcsb/pdb-extract-data
-	doins pdb-extract-data/* || die
-}
diff --git a/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild b/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild
deleted file mode 100644
index 471f70af534b..000000000000
--- a/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild
+++ /dev/null
@@ -1,81 +0,0 @@
-# Copyright 1999-2011 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pdb-extract/pdb-extract-3.004-r1.ebuild,v 1.2 2011/07/21 19:04:04 jlec Exp $
-
-EAPI=3
-
-inherit eutils toolchain-funcs multilib prefix
-
-MY_P="${PN}-v${PV}-prod-src"
-
-DESCRIPTION="Tools for extracting mmCIF data from structure determination applications"
-HOMEPAGE="http://sw-tools.pdb.org/apps/PDB_EXTRACT/index.html"
-SRC_URI="http://sw-tools.pdb.org/apps/PDB_EXTRACT/${MY_P}.tar.gz"
-
-LICENSE="PDB"
-SLOT="0"
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
-IUSE=""
-
-RDEPEND="!<app-text/html-xml-utils-5.3"
-DEPEND="${RDEPEND}
-	>=sci-libs/cifparse-obj-7.025"
-
-S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	epatch \
-		"${FILESDIR}"/${P}-cflags-install.patch \
-		"${FILESDIR}"/${P}-gcc-4.3.patch \
-		"${FILESDIR}"/${P}-Makefile.patch \
-		"${FILESDIR}"/${P}-env.patch
-
-	sed -i "s:GENTOOLIBDIR:$(get_libdir):g" \
-		pdb-extract-v3.0/Makefile \
-		|| die "Failed to fix libdir"
-
-	# Get rid of unneeded directories, to make sure we use system files
-	ebegin "Deleting redundant directories"
-	rm -rf cif-file-v1.0 cifobj-common-v4.1 cifparse-obj-v7.0 \
-		misclib-v2.2 regex-v2.2 tables-v8.0
-	eend
-
-	sed -i \
-		-e "s:^\(CCC=\).*:\1$(tc-getCXX):g" \
-		-e "s:^\(CC=\).*:\1$(tc-getCC):g" \
-		-e "s:^\(GINCLUDES=\).*:\1-I${EPREFIX}/usr/include/cifparse-obj:g" \
-		-e "s:^\(LIBDIR=\).*:\1${EPREFIX}/usr/$(get_libdir):g" \
-		"${S}"/etc/make.* \
-		|| die "Failed to fix makefiles"
-
-	eprefixify pdb-extract-v3.0/Makefile etc/*
-}
-
-src_install() {
-	dobin bin/pdb_extract{,_sf} \
-		|| die "failed to install binaries"
-	newbin bin/extract extract-pdb \
-		|| die "failed to rename extract binary"
-	dolib.a lib/pdb-extract.a  \
-		|| die "failed to install library"
-	insinto /usr/include/rcsb
-	doins include/* \
-		|| die "failed to install include files"
-	dodoc README-source README \
-		|| die "failed to install docs"
-	insinto /usr/lib/rcsb/pdb-extract-data
-	doins pdb-extract-data/*  \
-		|| die "failed to install data files"
-
-	cat >> "${T}"/envd <<- EOF
-	PDB_EXTRACT="${EPREFIX}/usr/lib/rcsb/"
-	PDB_EXTRACT_ROOT="${EPREFIX}/usr/"
-	EOF
-
-	newenvd "${T}"/envd 20pdb-extract \
-		|| die "failed to install env files"
-}
-
-pkg_postinst() {
-	ewarn "We moved extract to extract-pdb due to multiple collision of ${EROOT}usr/bin/extract"
-}