Version bump

Package-Manager: portage-2.2_rc67/cvs/Linux x86_64

3 files changed, 54 insertions, 2 deletions

diff --git a/sci-biology/mira/ChangeLog b/sci-biology/mira/ChangeLog
index 5d66fdb70cc9..294e9c88c85b 100644
--- a/sci-biology/mira/ChangeLog
+++ b/sci-biology/mira/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/mira
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.7 2010/03/18 15:32:24 weaver Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/ChangeLog,v 1.8 2010/05/05 08:00:05 weaver Exp $
+
+*mira-3.0.5 (05 May 2010)
+
+  05 May 2010; Andrey Kislyuk <weaver@gentoo.org> +mira-3.0.5.ebuild:
+  Version bump
 
 *mira-3.0.3 (18 Mar 2010)
 
diff --git a/sci-biology/mira/Manifest b/sci-biology/mira/Manifest
index a000fd526787..287ff7c3a91c 100644
--- a/sci-biology/mira/Manifest
+++ b/sci-biology/mira/Manifest
@@ -1,9 +1,12 @@
 AUX mira-3.0.0-asneeded.patch 1468 RMD160 5ad66bd3a1861ef984af4fb2b527755fd8901440 SHA1 f17e537e98f77eeaaf7502894f8383dd96c588bc SHA256 17dec784921baccf2c515f7c269209b5cdeb23143b3412e8ad967e74682ee71f
 DIST mira-3.0.0.tar.bz2 7323621 RMD160 ab95d728a74b101ff49bea80bc5648fa9ebb69b8 SHA1 d736b324115d24270602cdc7066feb928869a916 SHA256 564177fb9777ecdf657640f8e7ea5d7aa0e76b35cebb882ccf77e1714d2fe21d
 DIST mira-3.0.3.tar.bz2 7170009 RMD160 fa96aded8a6b232c2e62b1f67349ac5f0dfb455e SHA1 eb8b7e19852f4f55387f6485aa07fa2298266bf2 SHA256 35194676d2414765bf9556a5d8f38f9d005df269e181df140cfaac5870c6a8fb
+DIST mira-3.0.5.tar.bz2 7132355 RMD160 206f209dec8ac32f8192160a7642e3d27a42df25 SHA1 c4659ed69e8ffe328050b985a971b81d0bf73fd2 SHA256 82da77b203b17040939a39a53b6cdf874ba39a448d68770ebf70edfc53884839
 DIST mira_3rdparty_06-03-2010.tar.bz2 26882 RMD160 78dad2e93ab436843b8e5275cde9421d84c69143 SHA1 edd1629c7f91d99d3f0f807d45e9b3997d845928 SHA256 fed4ecc77f6bc63ac96864d0e10987129f64613a461715399b24f62ae0802c65
+DIST mira_3rdparty_17-04-2010.tar.bz2 31296 RMD160 888a38f865963b3109d3a331604e079010b55d81 SHA1 5f2fbe3e2e1bb5c5de44d414963e57b8dbcf760c SHA256 ec2c77508d75b7c28d3d26137ab69648b1ed653af93d486245ad0e4624e332b2
 DIST mira_3rdparty_31-01-2010.tar.bz2 23314 RMD160 d1edd2281693db1f7c472390128551c7f45775ab SHA1 0add918747b1d7ff50b81df767e4839463b06f06 SHA256 8b042447e7f6f7de15166c9b667477358a9f78a6c98347bb8eddf278c8a8c50b
 EBUILD mira-3.0.0.ebuild 1284 RMD160 8f42b6262f349a6e7062021f4ec8cf0af3986308 SHA1 c68947cb1b84e8ea5433f218f77280767f6c9fa6 SHA256 3effc7c86c50ca88ea2471e93283ed41fdc52ab407a3344026adc2fb15cb0a0b
 EBUILD mira-3.0.3.ebuild 1288 RMD160 24114d23e2465d9c732512282496b2a3ae5fb8d0 SHA1 aa60650afae63ba52a51abaf29a350e5424039a5 SHA256 ca19bcf675cb1d48ae5cd5163cbc599b6331d41ec9beb58ab294e82e7ababd83
-MISC ChangeLog 1168 RMD160 e4d32eb1dfc64b9fa369023d4c5b92a691c8b1d4 SHA1 cd7600b5457a700c134aedd58c93c430e1bb218f SHA256 bb72734bc86e34c535799f168113233c065dc1c6433c61dea8d7562fe69ad7a9
+EBUILD mira-3.0.5.ebuild 1298 RMD160 7024cfb4d77ea6bf93055867ded6f131daf61578 SHA1 875b6297bc2b33576dabd671eddc9a2081ab40c7 SHA256 b46f6f2b5d4e9542bc601c47adedb5af8939bc23c96730bb962589ff900ab8ea
+MISC ChangeLog 1281 RMD160 a1809fc05cad32d1810d956821de952f5a992866 SHA1 0affecff4a5b41b36a9ede47610bbb0d0b1efd75 SHA256 a72f96f44879632cfc4b7d04ee1ca0e1612b06c39baa83dda5629e793be8fd6e
 MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110
diff --git a/sci-biology/mira/mira-3.0.5.ebuild b/sci-biology/mira/mira-3.0.5.ebuild
new file mode 100644
index 000000000000..00d6e0a564f6
--- /dev/null
+++ b/sci-biology/mira/mira-3.0.5.ebuild
@@ -0,0 +1,44 @@
+# Copyright 1999-2010 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/mira/mira-3.0.5.ebuild,v 1.1 2010/05/05 08:00:05 weaver Exp $
+
+EAPI="2"
+
+MIRA_3RDPARTY_PV="17-04-2010"
+
+inherit base autotools
+
+DESCRIPTION="Whole Genome Shotgun and EST Sequence Assembler for Sanger, 454 and Solexa / Illumina"
+HOMEPAGE="http://www.chevreux.org/projects_mira.html"
+SRC_URI="mirror://sourceforge/mira-assembler/${P}.tar.bz2
+	mirror://sourceforge/mira-assembler/mira_3rdparty_${MIRA_3RDPARTY_PV}.tar.bz2"
+
+LICENSE="GPL-2"
+SLOT="0"
+IUSE="doc"
+KEYWORDS="~amd64 ~x86"
+
+CDEPEND=">=dev-libs/boost-1.35.0"
+DEPEND="${CDEPEND}
+	dev-libs/expat
+	doc? ( >=app-text/texlive-core-2009 )"
+RDEPEND="${CDEPEND}"
+
+src_prepare() {
+	find -name 'configure*' -or -name 'Makefile*' | xargs sed -i 's/flex++/flex -+/' || die
+	epatch "${FILESDIR}"/${PN}-3.0.0-asneeded.patch
+	AT_M4DIR="config/m4" eautoreconf
+}
+
+src_compile() {
+	base_src_compile
+	if use doc; then emake -C doc clean docs || die; fi
+}
+
+src_install() {
+	einstall || die
+	dodoc AUTHORS GETTING_STARTED NEWS README* HELP_WANTED THANKS INSTALL
+	find doc/docs/man -type f | xargs doman
+	find doc/docs/texinfo -type f | xargs doinfo
+	dobin "${WORKDIR}"/3rdparty/{sff_extract,qual2ball,*.pl}
+}