Bumping to latest

Package-Manager: portage-2.1.4_rc10

4 files changed, 71 insertions, 5 deletions

diff --git a/sci-biology/seaview/ChangeLog b/sci-biology/seaview/ChangeLog
index 303ab22906d9..6074a4c31199 100644
--- a/sci-biology/seaview/ChangeLog
+++ b/sci-biology/seaview/ChangeLog
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/seaview
 # Copyright 2000-2007 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.15 2007/10/22 23:23:42 je_fro Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/ChangeLog,v 1.16 2007/12/19 07:38:37 je_fro Exp $
+
+*seaview-2.2 (19 Dec 2007)
+
+  19 Dec 2007; <jeff@gentoo.org> +seaview-2.2.ebuild:
+  Bump to latest version.
 
   22 Oct 2007; <jeff@gentoo.org> +files/seaview.desktop,
   seaview-20070919.ebuild:
diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index 52f5672f4c35..03a55c03e477 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -5,6 +5,11 @@ SHA256 cdcb6a86d2c21a3a74a684aed28398b869d5dcd878385c30bf84f91e83446d30 files/se
 DIST seaview-20041220.tar.bz2 115192 RMD160 a557e906c9115db74ddfdecc4fdc647df336b3c3 SHA1 f237a7ccc0ba7e69c6b61a6aaac4ae4d0be12c71 SHA256 045b09e08d49f9630243e3bc19d8cc630874e1c4f64a1d91997e76e5af2cd6d7
 DIST seaview-20060213.tar.bz2 114995 RMD160 c3409b5e06f15e983db4912812381ee5d5894ea9 SHA1 6dffddf934e82eb155e47dcd58f9a5612511fcff SHA256 be058f53f07cec46978f10ddad8794bbe79762cf089d18b5cbe7cb6ed15c54fc
 DIST seaview-20070919.tar.bz2 129867 RMD160 a930e5286c8e2c82dd1b7d33f15682b525a83f4f SHA1 db2d36e6ef7cd446caf79cb93258c3b72b067248 SHA256 4c2b3d1e051f72194dc1b7fc742ed92c97f86926615fbd768b2f2e3cff7fea33
+DIST seaview_2.2.tar.gz 155877 RMD160 59b9b0782138a2c46a6fec36cf15042b37aa72de SHA1 d38191022bfe95112460800a1fc1dcefbc761bec SHA256 ad1d7a66dcc5f97538b2d51e3a4e91295476c1fdd2b8877073bd12bab4d86d99
+EBUILD seaview-2.2.ebuild 1358 RMD160 44e17398b6ea3be32d9545db96cb16683c4c2f3a SHA1 e746ebfa954c4bdc5b119d8e9a43556942faf841 SHA256 06330692de7962f6289c34711ad4bb5c3c024658777abed77b1bf3fae770267f
+MD5 a3113b8a30fc20f193aaaa4601b0a91e seaview-2.2.ebuild 1358
+RMD160 44e17398b6ea3be32d9545db96cb16683c4c2f3a seaview-2.2.ebuild 1358
+SHA256 06330692de7962f6289c34711ad4bb5c3c024658777abed77b1bf3fae770267f seaview-2.2.ebuild 1358
 EBUILD seaview-20041220.ebuild 1251 RMD160 8442894ac4b6677ede0ad4c16b3811f9b75feec9 SHA1 198c404feca1f423da8ceae4463ac1032cc7cad6 SHA256 7525d4b7acc91570afc0d834f578ee914efd621861973c6870618a05517ffa8d
 MD5 08ec0631100adb67aaba3be99b50fac4 seaview-20041220.ebuild 1251
 RMD160 8442894ac4b6677ede0ad4c16b3811f9b75feec9 seaview-20041220.ebuild 1251
@@ -17,14 +22,17 @@ EBUILD seaview-20070919.ebuild 1400 RMD160 185c09dbfd7aebc59378ae2120a895eb392bd
 MD5 7a51ed6f791962db3638740ec5bde158 seaview-20070919.ebuild 1400
 RMD160 185c09dbfd7aebc59378ae2120a895eb392bdb25 seaview-20070919.ebuild 1400
 SHA256 7ec52ab965ad32515c111688916441d86ca8cd262ece5974ff736db37cdfc8ab seaview-20070919.ebuild 1400
-MISC ChangeLog 3070 RMD160 888eda8c7afae929418ef465dee06cc7ba2ca2de SHA1 628754386310b85cf2da1de2120194b930194102 SHA256 a840c3b8be2dd836a955513db531310e0e8e371943d2d2f3dda71db32ec70398
-MD5 f52848083732a449a33721137f59454c ChangeLog 3070
-RMD160 888eda8c7afae929418ef465dee06cc7ba2ca2de ChangeLog 3070
-SHA256 a840c3b8be2dd836a955513db531310e0e8e371943d2d2f3dda71db32ec70398 ChangeLog 3070
+MISC ChangeLog 3179 RMD160 dc8177db2f04db09e6834b64ded9e2a32b662715 SHA1 f78db3f3b37ae04564d657333fa63d9d2a9252f7 SHA256 e71727753149f606f46e2ef9a1070088fd2a6656cc8ba3460a5e7943fd3957fd
+MD5 c80047a340aa3f840e8c37248ba7b812 ChangeLog 3179
+RMD160 dc8177db2f04db09e6834b64ded9e2a32b662715 ChangeLog 3179
+SHA256 e71727753149f606f46e2ef9a1070088fd2a6656cc8ba3460a5e7943fd3957fd ChangeLog 3179
 MISC metadata.xml 622 RMD160 971008c946d3c492a86c946d8be5ed7881981600 SHA1 4a772f6c65f56de1a01eb770bc3b00998e8fc793 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529
 MD5 62b43c9f7320b7c9c27eac02b2644cd5 metadata.xml 622
 RMD160 971008c946d3c492a86c946d8be5ed7881981600 metadata.xml 622
 SHA256 a1d62029203598fbf7b1f3d97d004ff7fccf30246276ff8f9ba99b7696691529 metadata.xml 622
+MD5 33f3d837208d64e3fb76bc6b72d947ec files/digest-seaview-2.2 235
+RMD160 5f47ae4b90a1691f274ef0d606d74f6ca48d0581 files/digest-seaview-2.2 235
+SHA256 e4b522345bdf014d57eda6efdaefe1b248c01324c3a6b3f90a5c32d3ef3d2d36 files/digest-seaview-2.2 235
 MD5 5b1989dfbbf9ea843666ea3218872d1e files/digest-seaview-20041220 253
 RMD160 49aefa5d6c963205cbe4ff5a47d5045f21f0d079 files/digest-seaview-20041220 253
 SHA256 36bbcb192079998e4b6b5601cdba9d35fe7a8cf850cfb97b4d5cc93ea11e90e8 files/digest-seaview-20041220 253
diff --git a/sci-biology/seaview/files/digest-seaview-2.2 b/sci-biology/seaview/files/digest-seaview-2.2
new file mode 100644
index 000000000000..63701108bc71
--- /dev/null
+++ b/sci-biology/seaview/files/digest-seaview-2.2
@@ -0,0 +1,3 @@
+MD5 582d5feeae8563cb4e3f9793e29010b5 seaview_2.2.tar.gz 155877
+RMD160 59b9b0782138a2c46a6fec36cf15042b37aa72de seaview_2.2.tar.gz 155877
+SHA256 ad1d7a66dcc5f97538b2d51e3a4e91295476c1fdd2b8877073bd12bab4d86d99 seaview_2.2.tar.gz 155877
diff --git a/sci-biology/seaview/seaview-2.2.ebuild b/sci-biology/seaview/seaview-2.2.ebuild
new file mode 100644
index 000000000000..d68166fac012
--- /dev/null
+++ b/sci-biology/seaview/seaview-2.2.ebuild
@@ -0,0 +1,50 @@
+# Copyright 1999-2007 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/seaview/seaview-2.2.ebuild,v 1.1 2007/12/19 07:38:37 je_fro Exp $
+
+inherit toolchain-funcs multilib
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+
+MY_PF=${PF/-/_}
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${MY_PF}.tar.gz"
+
+LICENSE="public-domain"
+
+SLOT="0"
+KEYWORDS="~x86 ~ppc ~amd64"
+IUSE=""
+
+DEPEND="x11-libs/fltk
+	=media-libs/pdflib-6.0*
+	sci-biology/clustalw"
+
+S=${WORKDIR}
+
+src_unpack() {
+	unpack ${A}
+	cd "${S}"
+
+	# Respect CXXFLAGS. Package uses CFLAGS as CXXFLAGS.
+	# Fix invocation of C++ compiler.
+	# Fix include and library paths.
+	sed -i \
+		-e '/^FLTK/d' \
+		-e '/^X11/d' \
+		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
+		-e 's:-I$(FLTK):-I/usr/include/fltk-1.1:' \
+		-e 's:-I$(X11)/include:-I/usr/include/X11R6:' \
+		-e "s:\(^CFLAGS .*\):\1 ${CXXFLAGS}:" \
+		-e "s:-L\$(FLTK)/lib:-L/usr/$(get_libdir)/fltk-1.1:" \
+		-e "s:-L\$(X11)/lib:-L/usr/$(get_libdir)/X11:" \
+		-e "s:^#HELP_NOT_IN_PATH:HELP_NOT_IN_PATH:" \
+		-e "s:bge/mgouy:usr/share:" \
+		Makefile || die "sed Makefile failed"
+}
+
+src_install() {
+	dobin seaview seaview_align.sh
+	insinto /usr/share/${PN}
+	doins protein.mase seaview.help
+}