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| author |   Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:04:24 +0000 |
|---|---|---|
| committer | Andrey Kislyuk <weaver@gentoo.org> | 2009-02-27 00:04:24 +0000 |
| commit | 98bebd0298cc6890477b51a1d27324a001a09af5 (patch) | |
| tree | de0cbffa8b4b2d265e66d4a166f63efcd391ab60 /sci-biology | |
| parent | Version cleanup, plus added patch for 2.6.27 compatibility (Bug #244756) (diff) | |
| download | historical-98bebd0298cc6890477b51a1d27324a001a09af5.tar.gz historical-98bebd0298cc6890477b51a1d27324a001a09af5.tar.bz2 historical-98bebd0298cc6890477b51a1d27324a001a09af5.zip | |
Import from Science overlay, bug 253364
Package-Manager: portage-2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64
Diffstat (limited to 'sci-biology')
| -rw-r--r-- | sci-biology/phred/ChangeLog | 13 | ||||
| -rw-r--r-- | sci-biology/phred/Manifest | 4 | ||||
| -rw-r--r-- | sci-biology/phred/metadata.xml | 9 | ||||
| -rw-r--r-- | sci-biology/phred/phred-071220.ebuild | 40 |
4 files changed, 66 insertions, 0 deletions
diff --git a/sci-biology/phred/ChangeLog b/sci-biology/phred/ChangeLog new file mode 100644 index 000000000000..820b04bf9e5a --- /dev/null +++ b/sci-biology/phred/ChangeLog @@ -0,0 +1,13 @@ +# ChangeLog for sci-biology/phred +# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phred/ChangeLog,v 1.1 2009/02/27 00:04:24 weaver Exp $ + +*phred-071220 (26 Feb 2009) + + 26 Feb 2009; Andrey Kislyuk <weaver@gentoo.org> +metadata.xml, + +phred-071220.ebuild: + Import from Science overlay + + 20 Feb 2009; weaver <weaver@gentoo.org> ChangeLog: + New package, ebuild written by me, thanks to Martin Mokrejs + diff --git a/sci-biology/phred/Manifest b/sci-biology/phred/Manifest new file mode 100644 index 000000000000..f3a09c24e7a0 --- /dev/null +++ b/sci-biology/phred/Manifest @@ -0,0 +1,4 @@ +DIST phred-dist-071220.b-acd.tar.gz 357767 RMD160 4b862fe97f8637b9c125599276282e768ea8344e SHA1 4b132c6d0535fee15b5ad5e9b811449b58701bd5 SHA256 364b0b54c29717ba4c8acc48a128eaf25ba1d7f06acab7565975f6879764a975 +EBUILD phred-071220.ebuild 947 RMD160 37bb03605439619a4086112548df6827baf19a9e SHA1 9d0c726358567c026a822957a6e866103e1b89dd SHA256 8504ca2df0b47536b26b08aee91093b0229ee2e072ca156734192e6acfc24c35 +MISC ChangeLog 472 RMD160 9369ff99d8d68897889cbb2ea6069bc72657b88c SHA1 8f4e67f30c7defa0fc4d159849075a14dfa96b58 SHA256 4fe5c0eef54bf8ac9ecd4730c49f423a6853b98184e54172d720d9f47d79b83f +MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 diff --git a/sci-biology/phred/metadata.xml b/sci-biology/phred/metadata.xml new file mode 100644 index 000000000000..3302123e5718 --- /dev/null +++ b/sci-biology/phred/metadata.xml @@ -0,0 +1,9 @@ +<?xml version="1.0" encoding="UTF-8"?> +<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> +<pkgmetadata> + <maintainer> + <email>weaver@gentoo.org</email> + <name>Andrey Kislyuk</name> + </maintainer> + <herd>sci-biology</herd> +</pkgmetadata> diff --git a/sci-biology/phred/phred-071220.ebuild b/sci-biology/phred/phred-071220.ebuild new file mode 100644 index 000000000000..761079a51f82 --- /dev/null +++ b/sci-biology/phred/phred-071220.ebuild @@ -0,0 +1,40 @@ +# Copyright 1999-2009 Gentoo Foundation +# Distributed under the terms of the GNU General Public License v2 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/phred/phred-071220.ebuild,v 1.1 2009/02/27 00:04:24 weaver Exp $ + +DESCRIPTION="A base caller for Sanger DNA sequencing" +HOMEPAGE="http://phrap.org/phredphrapconsed.html" +SRC_URI="phred-dist-071220.b-acd.tar.gz" + +LICENSE="phrap" +SLOT="0" +KEYWORDS="~amd64 ~x86" +IUSE="" + +DEPEND="" +RDEPEND="" + +S="${WORKDIR}" + +RESTRICT="fetch" + +pkg_nofetch() { + einfo "Please visit ${HOMEPAGE} and obtain the file" + einfo "${SRC_URI}, then place it in ${DISTDIR}" +} + +src_compile() { + sed -i -e 's/CFLAGS=/CFLAGS += /' Makefile + emake daev || die + emake || die +} + +src_install() { + dobin phred daev || die + insinto /usr/share/${PN} + doins phredpar.dat || die + echo "PHRED_PARAMETER_FILE=/usr/share/${PN}/phredpar.dat" > 99phred + doenvd 99phred || die + newdoc DAEV.DOC DAEV.DOC.txt + newdoc PHRED.DOC PHRED.DOC.txt +} |